CANTATAdb - search

Detailed information on CNT30712201

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7I2|AIR1_ARATH, E-value = 1e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30599147	Glycine max	Fraxinus excelsior	15.1	32.49	82.52	103	forward

Expression of CNT30712201

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPKTFALRAVQRHTAASRSTSPSRRVQQGVTGG*

>peptide 2 (33 aa)
MPKMFALRAVQRHTAASRSTRPLRREQQGVTGG*

Sequence

>CNT30712201
ATCGGAAGTTAATCCCCCCCCATGCACGTACAATTAGAACCACACTCTGATCAATAGAATTTGAAGAAGAAAAAATGGAAAGCCACAACTAGAGCAAACC
CGAAGCAAAAGAAGATTTAAGATGATATGTTATACTTATAGTATAAGCTTAGTAGGCACATTGGAAATCACGTGGGGCTTTCCTTGAGCAAACATTGAGA
AGCAAGCTGAGTGAGATCGGAAGGTTGAGGTTGATGCCCAAAACATTTGCTTTGAGGGCAGTGCAAAGGCACACTGCAGCCTCAAGGTCAACGAGCCCAT
CGAGAAGGGTGCAGCAAGGGGTAACTGGTGGTTGAGAAGCAAGCTGAGTGAGATTGGAAGGTTGAGGTTGATGCCCAAAATGTTTGCCCTAAGGGCAGTG
CAAAGGCACACTGCAGCTTCAAGATCAACAAGACCATTGAGGAGGGAGCAACAAGGGGTAACTGGTGGTTGACCTAAAGTCACGTTCAACAACCCGTTTA
GCACATTGGCACACACTCCTAGTTTGAGTGCGTCACGAGGGCAAGAGGTACTTGAGCCACCTGAACCACCCGAGCCACCTGAACCACCAGAACCACCTGA
ACCACCAGAGCCACCTGAACCACCAGAGCCTCCTGAACCACCCGAACCACCTGAGCCACCTGAAGGACTTGGCTTAACAGGC