Detailed information on CNT30712072


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671345Glycine maxSetaria viridis42.2724.795.9268reverse complement
CNT30641383Glycine maxNymphaea colorata42.278.5895.15268forward
CNT30702366Glycine maxQuercus lobata42.2726.9196.27268reverse complement
CNT30618341Glycine maxSesamum indicum44.3252.0495.73281forward
CNT30504586Glycine maxNicotiana attenuata46.0616.5896.23292forward
CNT30637481Glycine maxCapsicum annuum46.0665.1894.52292forward
CNT30221833Glycine maxHordeum vulgare42.4319.7193.31269forward
CNT30543267Glycine maxBrassica napus41.9619.4792.11266forward
CNT30147396Glycine maxMedicago truncatula100.6321.4593.57638forward
CNT30441199Glycine maxAegilops tauschii42.7427.2995.2271forward
CNT30258490Glycine maxAvena sativa31.2327.4294.44198forward
CNT30202530Glycine maxHelianthus annuus46.0639.8495.21292forward
CNT30682011Glycine maxTriticum urartu35.4923.0894.67225forward
CNT30369921Glycine maxOryza glumipatula35.1796.9695.52223forward
CNT30434185Glycine maxPapaver somniferum42.939.8288.24272forward
CNT30571801Glycine maxVitis vinifera46.0622.3896.58292reverse complement
CNT3057237Glycine maxAmborella trichopoda25.7111.8191.41163forward
CNT3038324Glycine maxCucumis melo45.2715.2293.73287reverse complement
CNT30557400Glycine maxPanicum hallii42.7419.7593.73271forward

Expression of CNT30712072

Peptides detected in this lncRNA

>peptide 1 (82 aa)
VRQFGSYLPLVLKGKLRGANPSMRGLGWANLWCTGCYANSSVGLLSWYGRTVAPWEILLYTSSRTRFLNRTSIGERCKHCEV*

Sequence

>CNT30712072
CGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGGGAAAACTGCGAGGAGCCAACCCTAGTATGAGAGGACTGGGTTGGGCCAACCTATGGTGT
ACCGGTTGTTATGCCAATAGTAGTGTCGGGCTGCTAAGTTGGTATGGAAGAACTGTTGCGCCGTGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGT
TTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCACTGCGAGGTGTGAAGCGATCTCGTACTAAACGAAACAACTTTCACTTTCCATAACAAAAAAAA
ATAAAGTCAACCTATTCCTCCTTACTCTAACAAGTAAGCAAGTCAACTACCTGCAATTGCGGTCAATCTCGCTACCTCTTTAGTTGCCGCCCCCTACTTG
CTCATTCGCAATTACTACAAAGTCGCCCCTCTCTCTAAGGGGGCTTATGAACTCAGAAACTTTTTCGTATGTTATGGGGTCGCGAAGAATTTTGCTGCCA
ACCCTAGTTAGCAAGCTGAAATGAAAAAGTCTTTTCTAATAAATAAGGTAAGCTTCATAGCTCCAACCTAGGGGGTCATTAGACCGCCGCTTACTTACTA
AGCACTGGTTCTATCCCGGCCAAGCAACCAAAGG