Detailed information on CNT30712018


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4H1G4|METK1_BETVU, E-value = 5e-89

BLAST vs NONCODE:
NONPOPT000587, E-value = 2e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521128Glycine maxSetaria italica61.7744.8182.62328forward
CNT30376698Glycine maxArabidopsis thaliana53.4842.7782.04284forward
CNT30618114Glycine maxSesamum indicum36.1642.4884.38192forward
CNT30402638Glycine maxBeta vulgaris63.8426.4687.91339forward
CNT30158121Glycine maxPistacia vera56.54883300forward
CNT30188757Glycine maxSecale cereale62.7175.1781.68333forward
CNT30225130Glycine maxHordeum vulgare47.8360.1979.92254forward
CNT30508429Glycine maxSolanum lycopersicum22.9849.3985.25122forward
CNT30144304Glycine maxMedicago truncatula45.237.3385.83240forward
CNT3013982Glycine maxZea mays44.0780.6985.47234forward
CNT3066706Glycine maxLeersia perrieri24.2937.9486.05129forward
CNT30620812Glycine maxCajanus cajan63.6527.2185.5338forward

Expression of CNT30712018

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVFSSRYFSGITGLITCSLRSAAISSLVTVSSCWVEISTVWTRTGTLAPLSL*

>peptide 2 (39 aa)
MAQWHQFRGFISGIAKHVTLVTSTNFFRFFGEVAVYTLSN

>peptide 3 (43 aa)
GITGLITCSLRSAAISSLVTVSSCWVEISTVCTRIGTLAPLSL*

Sequence

>CNT30712018
CTGGGATCACAGGCTTGATCACATGCTCTTTGAGGTCAGCAGCAATTTCGTCATTGGTGACAGTCTCGTCGTGTTGGGTGGAGATTAGCACGGTGTGTAC
ACGAATAGGAACCCTGGCACCATTGTCATTGTAATACTCAACGTGGAAAATGGTCTTCTCATCAAGGTACTTCTCTGGGATCACAGGCTTGATCACATGC
TCTTTGAGGTCAGCAGCAATTTCGTCATTGGTGACAGTCTCGTCGTGTTGGGTGGAGATTAGCACGGTGTGGACACGAACCGGAACCCTGGCACCATTGT
CATTGTAATACTCAACGGTCACTTGGGTCTTCCCATCAGGCCTCAGCCAAGGGCAGGTACCGTTCTTGCGAACCTCGGTGAGACGAGCACCGAGTTTTGT
TGCAAGAACATGGCTCAATGGCATCAATTCAGGGGTTTCATCAGTGGCATAGCCAAACATGTGACCCTGGTCACCAGCACCAATTTCTTCAGGTTTTTTG
GTGAGGTGGCCGTGTACACCCTGAGCAATAT