Detailed information on CNT30712006


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU33|ERLL3_ARATH, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629094Glycine maxVigna unguiculata54.328.8488.42259forward
CNT30145276Glycine maxMedicago truncatula30.1919.4390.28144forward
CNT30114653Glycine maxEutrema salsugineum20.5512.6182.6598forward

Expression of CNT30712006

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPKMFALRAVQRHTAASRSTRPLRREQQGVTGG*

Sequence

>CNT30712006
GTGGGACTTGCCTTGAGCAAACATTGAGAAGCAAGCTGAGTGAGATAGGAAGCCACAACTACGAATAAGCACGAAGCAACTTGTGCATATCATAGACCAT
GATGATTAAGCACATTGGAAATCACGTGGGACTTGCCTTGAGCAAACATTGAGAAGCAAGCTGAGTGAGATTGGAAGGTTGAGGTTGATGCCCAAAATGT
TTGCCCTAAGGGCAGTGCAAAGGCACACTGCAGCTTCAAGATCAACAAGACCATTGAGGAGGGAGCAACAAGGGGTAACTGGTGGTTGACCTAAAGTCAC
GTTCAACAACCCGTTTAGCACATTGGCACACACTCCTAGTTTGAGTGCGTCACGAGGGCAAGAGGTACTTGAGCCACCTGAACCACCCGAGCCACCTGAA
CCACCAGAACCACCTGAACCACCAGAGCCACCTGAACCACCAGAGCCTCCTGAACCACCCGAACCACCTGAGCCACC