CANTATAdb - search

Detailed information on CNT30712003

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-155

BLAST vs NONCODE:
NONMTRT001024, E-value = 5e-103

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30525213	Glycine max	Phaseolus vulgaris	81.94	79.98	89.81	667	forward
CNT30145430	Glycine max	Medicago truncatula	75.55	35.02	83.9	615	forward
CNT30425713	Glycine max	Papaver somniferum	80.71	64.29	82.19	657	forward
CNT30174484	Glycine max	Vigna angularis	57.99	96.52	89.41	472	forward

Expression of CNT30712003

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MQSGFLLNIVICQGTTIFQLLPSKNEPLLIWRDTFLVLNLSFHIVNSIRAFHLQGDGLSRQSLDENLHATS*

>peptide 2 (40 aa)
MVSEDSTSRVMVLPVKVLTKICMPPLRRSTRWRVDSFWML*

>peptide 3 (30 aa)
SLKRVQYIILKHNKQQHLNQRCKAQVQGRH*

Sequence

>CNT30712003
TTCGCTGAAACGAGTTCAATACATCATTTTAAAACATAATAAACAGCAGCACTTAAACCAGAGATGCAAAGCACAAGTTCAAGGGAGACACTGAACAAAC
AGATAAGACATATGAGAACACTTCATAAAAGGGATTCCCCTTAGCAACCACCACGAAGGCGAAGGACAAGATGCAAAGTGGATTCCTTCTGAATATTGTA
ATCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTAGCTTTCACA
TTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCATGCCACCTCTTAAACGAAGAACCAAGT
GTAAGGTAGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGGAGGGATACC
CTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGC
ATGCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCGACCATCCTCAAGCTGTTTACCCGCAAAGA
TAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTCACGTTATCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTT
ACCGGTCAAAGTTT