Detailed information on CNT30711924


BLAST search results

BLAST vs Swiss-Prot:
sp|C1KEU0|METE_KALTU, E-value = 3e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404182Glycine maxBeta vulgaris41.3543.5781.5227forward
CNT30224666Glycine maxHordeum vulgare20.0449.5583.64110forward
CNT30563287Glycine maxActinidia chinensis37.3444.1883.41205forward
CNT30555782Glycine maxOryza glaberrima31.6943.7280.46174forward
CNT30312764Glycine maxCamelina sativa37.754.9186.96207forward
CNT30264951Glycine maxBrassica rapa39.1663.9986.05215forward
CNT30282Glycine maxZea mays27.1449.0183.22149forward
CNT30129110Glycine maxCorymbia citriodora58.8383.2582.35323forward
CNT30478263Glycine maxArabidopsis halleri14.9423.791.4682forward
CNT3027096Glycine maxPopulus trichocarpa40.0763.2286.82220forward
CNT30578457Glycine maxOryza barthii31.6930.6981.61174forward
CNT3049510Glycine maxCucumis sativus36.4349.586.5200forward

Expression of CNT30711924

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPQQGCQQSRSQQEHSNQTKQAQVLHMRQ*

>peptide 2 (55 aa)
MFLPSTTPAKRYFPLGNPPLIKSRVLVPRTKSNPYAVTPFRDVRVLYASAGMSAK*

>peptide 3 (42 aa)
SSLWPDNALANALTSTIFWAAKASHDLISSSNLVSLTRSTAV*

Sequence

>CNT30711924
CCTCATCCTTGTGGCCAGACAATGCTTTAGCCAATGCGTTAACTTCAACAATTTTTTGGGCAGCAAAAGCTAGCCATGACTTGATCTCATCATCCAACTT
GGTCTCGTTAACTAGATCAACAGCAGTGTGAAGAAGGGAGGAGGAGGTGGACACAACAAGCTTATCTGCATACAGTTTAAATAATAGATACATCAGACCC
TGCAAGGTAGTGAGAGAAGCAGCAAGGTCATTGGCCCAGATGTTCCTTCCATCAACCACTCCAGCAAAGAGGTATTTTCCGCTGGGAAATCCACCCTTGA
TCAAATCAAGAGTGTTGGTTCCACGGACCAAATCAAATCCATATGCAGTGACGCCATTCAGAGATGTGAGGGTCTTGTATGCCTCAGCAGGGATGTCAGC
AAAGTAGGTCTCAACAAGAACATTCAAACCAGACAAAGCAGGCGCAAGTTCTGCATATGCGTCAGTGAATGCTTGCAACTTGTGAGACTCAAGGTCCAAG
ACAAGGGTAGGCTCATCAAACTGAATCCATGAAGCACCAGCTGCCTTAA