« Back to Glycine max search


Detailed information on CNT30710937


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-39

BLAST vs NONCODE:
NONCQUT001608, E-value = 1e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30146172Glycine maxMedicago truncatula18.0226.3283.43175forward
CNT30649450Glycine maxRosa chinensis22.2536.4984.26216forward
CNT30356658Glycine maxLactuca sativa21.9412.9583.57213forward
CNT30176025Glycine maxVigna angularis19.4629.5389.42189forward
CNT30335392Glycine maxCynara cardunculus20.4924.4283.92199forward

Expression of CNT30710937

Peptides detected in this lncRNA

>peptide 1 (47 aa)
WKCKDNGFLKLFGNKATQHNSLFISSHPLISIEVRKQKPKIQDDEIS*

>peptide 2 (76 aa)
MEVMSLLVFLVGKPAMDLRPVNGATMPAPARLTVVTAGEEIIEEAISFFLVLNYLFFCCQISKLLLKLAIYNSVICV

Sequence

>CNT30710937
GATGGAAATGCAAGGACAATGGGTTCTTGAAGTTATTTGGAAACAAAGCAACACAACACAATAGCTTATTCATTAGTTCTCATCCATTAATTTCCATTGA
AGTCCGAAAACAGAAACCAAAAATACAGGATGATGAAATCTCATAAAGCAAAAACAAATGGGAATGTAGTTTAAGTACAACAAACAAAGTGGGGCGATGA
AGCTGATGCACTGCACTTGGCGAACGTTGTCAAATCCAATGATACGGATGAAGCCATTGGGGTATGCAGTCTTAGCCTCTTGAAGCTCCTTCAACACCTG
AGAAGCATCAGTGCAGCCAAACATAGGCAGCTTCCACATGGTCCAGTAGCGTCCATCATAGTATCCAGGTGACCTGTTGTGCTCACGGTACACGAAACCG
TGCTATATACAAACACAACAAACATATCAACCATCAAAACTCAAAACCAAGTGCTTGTTTTGTAATAATAGGGACAGATTTGATCAATATTGATAAGTCT
GAGATAGAAAAATCCATTAGATAAACTTAAATTTTGGAAAACAACCACTTCTCTTTTTTTTTTTTTTTTTTTTGTTTCCAAAAGTACTTTTAGCACGCCA
GCAAGAGAAGCGATTATTTCTTCAAAATAAGTTGAAACAAACTAAGACTAAGAAACTATAATTAAACCAAAAGGGGTTGCAAGAAATTGACCTCCAACTC
GAATTCCAAGCAAGGAATCCATCCTTTCCTTAGAAGCAATGGAGGTAATGTCATTGTTGGTCTTCCTCGTGGGGAAGCCAGCCATGGATTTGAGGCCGGT
GAATGGAGCAACCATGCCGGCACCGGCACGGTTGACGGTGGTAACAGCTGGGGAGGAGATCATTGAGGAAGCCATTTCCTTCTTCTTAGTTCTCAACTAC
TTGTTTTTCTGCTGCCAGATATCCAAGCTTCTGCTCAAACTTGCTATATATAATAGTGTGATTTGTGTAGT