Detailed information on CNT30710308


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-160

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641251Glycine maxNymphaea colorata73.3838.3386.73678forward
CNT30528694Glycine maxEucalyptus grandis74.5762.5287.08689forward
CNT30513419Glycine maxJuglans regia68.0773.4887.6629forward
CNT30525954Glycine maxPhaseolus vulgaris75.6563.7287.7699forward
CNT30630785Glycine maxVigna unguiculata74.4680.6688.37688forward
CNT3044343Glycine maxPrunus dulcis69.773.0288.04644forward
CNT30635990Glycine maxCapsicum annuum71.4331.8486.82660forward
CNT3089455Glycine maxVigna radiata77.8159.1387.48719forward
CNT30541358Glycine maxBrassica napus75.2253.585.18695forward
CNT30510145Glycine maxSolanum lycopersicum70.6745.8686.22653forward
CNT30311067Glycine maxCamelina sativa72.5153.0587.01670forward
CNT3077671Glycine maxBrassica juncea75.2271.4388.49695forward
CNT30264722Glycine maxBrassica rapa74.0364.6587.57684forward
CNT30228911Glycine maxAnanas comosus70.1341.6287.81648forward
CNT30217431Glycine maxKalanchoe fedtschenkoi73.5950.2286.47680forward
CNT30716337Glycine maxMalus domestica golden73.5954.8887.21680forward
CNT30623040Glycine maxDaucus carota71.2159.2386.63658forward
CNT30153569Glycine maxPrunus persica69.9171.6287.93646forward
CNT30704857Glycine maxPrunus avium73.5943.0788.24680forward
CNT30174646Glycine maxVigna angularis74.5766.1287.66689forward
CNT3051100Glycine maxCucumis sativus72.447.0886.1669forward

Expression of CNT30710308

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVLPVRVLTKICMPPRRRRTR*

>peptide 2 (40 aa)
MVSELSTSRVIVLPVRVLTKICIPPRRRNTKWRVDSFWML*

>peptide 3 (77 aa)
SIQLIIIYQLHKLITNSSNINGTIEFNTNQTYFQRSLQTHYTSHFFLKCLGKSNIEHHTEISSSLKPPTKTQHQVQS*

>peptide 4 (51 aa)
MFGKIQHRTSHRNQLQLKTPHEDATPSAELTPSGCCSQRGSFHPLAVCQQK*

Sequence

>CNT30710308
CCAGCATACAGTTGATAATTATATATCAGCTCCACAAATTGATAACAAACAGTAGTAACATTAATGGGACAATAGAGTTCAACACAAACCAAACTTATTT
TCAAAGGTCATTACAGACCCATTACACATCACATTTCTTCTTAAAATGTTTGGGAAAATCCAACATCGAACATCACACAGAAATCAGCTCCAGCTTAAAA
CCCCCCACGAAGACGCAACACCAAGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTTCCATCCTCTAGCTGTTTGCCAGCAAAAATA
AGCCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTAATAGTCTTAC
CCGTAAGGGTCTTGACGAAGATCTGCATACCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGTCC
GTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAG
CTCTCGACTTCTAGGGTTATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGGACGAGGTGAAGGGTTGACTCCTTCT
GGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTT
GGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATCTGTAGAGAGAGGTAG
GGAACTGCGCAAAGAGAATGAACT