CANTATAdb - search

Detailed information on CNT30709869

BLAST search results

BLAST vs Swiss-Prot:
sp|P09756|CB23_SOYBN, E-value = 2e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30589827	Glycine max	Musa acuminata	65.33	51.11	83.08	390	forward
CNT30171121	Glycine max	Trifolium pratense	68.51	46.58	82.4	409	forward
CNT30610017	Glycine max	Gossypium raimondii	45.23	82.32	86.67	270	forward
CNT30202642	Glycine max	Helianthus annuus	76.72	82.23	84.06	458	forward
CNT30646148	Glycine max	Cannabis sativa	41.71	61.03	85.94	249	forward

Expression of CNT30709869

Peptides detected in this lncRNA

>peptide 1 (52 aa)
ASNIKLDSDTQDNSHYLKYFTKHKSKNSQKSFRSLTLTFRGRSWWHRPRRCC*

Sequence

>CNT30709869
AGCAAGTAACATTAAGTTGGATTCGGATACACAAGATAATTCACATTATCTGAAGTACTTCACCAAACACAAATCTAAAAACTCTCAAAAGTCATTTCGT
TCTTTGACGCTCACTTTCCGGGGACGAAGTTGGTGGCATAGGCCCAGGCGTTGTTGTTGACAGGGTCAGCAAGGCCCAATGGGTCGAAGCTGCCACCTGG
GTAGATTGGGTCAGTGACCTCACCGAGGGGGCCACCAGCAATACGGTAACCTTCAACGGCACCCATTAGGATAACTTGTGTGGCCCAGATGGCGAGGATG
CTCTGGGCGTGGATCAGGCTTGGGTTGCCCAAGTAGTCGAGCCCACCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCTTCTCCGAACTTCA
CCCCGTTGCGGGACAGCAACTCCGGGAAGACGCAGCCCAAGGCTCCGAGCATGGCCCACCTGGAGTGGATCACTTCGAGTTCACGGTTCTTGGCGAAGTC
GCCTGGGAACTCACCGGTTAGGTAGGACGGGGGCTCGCCAGAGAATGGGCCCAAGTACTTGACTCGGTCTGGGCCGTACCATGGGCTTCCTGAGGAG