Detailed information on CNT30709232


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FI56|CLPC1_ARATH, E-value = 1e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672972Glycine maxSetaria viridis22.7975.5682.94170forward
CNT30272384Glycine maxChenopodium quinoa64.0844.7183.47478forward
CNT30404662Glycine maxBeta vulgaris60.0557.2981.03448forward
CNT30300179Glycine maxTriticum aestivum43.9728.1185.06328forward
CNT30393350Glycine maxTriticum turgidum43.1632.1785.09322forward
CNT30561426Glycine maxActinidia chinensis26.0126.2983.51194forward
CNT30171914Glycine maxTrifolium pratense21.7219.6495.68162forward
CNT30144776Glycine maxMedicago truncatula76.8143.6489.35573forward
CNT30254596Glycine maxAvena sativa22.3912.5986.23167forward
CNT30311914Glycine maxCamelina sativa20.7825.0887.1155forward
CNT303614Glycine maxZea mays42.956.1482.81320forward
CNT30717839Glycine maxMalus domestica golden17.5625.7990.08131forward
CNT30685087Glycine maxTriticum urartu40.3556.4785.05301forward
CNT3053264Glycine maxAmborella trichopoda28.4233.8784.43212forward
CNT30328300Glycine maxAsparagus officinalis19.975083.22149forward
CNT3037990Glycine maxCucumis melo37.6794.386.12281forward
CNT30150466Glycine maxBrachypodium distachyon10.3222.7185.7177forward
CNT30116632Glycine maxOryza nivara35.6669.4586.09266forward

Expression of CNT30709232

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKLAMGRLGFFSPTRARRIARLMALTASS*

>peptide 2 (34 aa)
FLHHSVPESFCHLKFNIFHLQSIKHLFELLSFSS*

>peptide 3 (32 aa)
MTRLCKVSSIFRRRSDSSSRMRQYAVCQLQSQ*

>peptide 4 (34 aa)
MGFLNLIKQYNSVRTTPNCLGQLTTFSVTNISRR*

Sequence

>CNT30709232
CTTCCTCCACCACTCTGTCCCTGAATCTTTCTGTCACTTGAAGTTCAATATCTTTCACCTTCAGTCTATCAAACACCTCTTTGAGCTGCTATCCTTCTCA
TCGTAATCCAGATCAAATCCAATTTTGCGGCCTCCTTTCTCAATCACACTGCTTCCAACATTTGATGTCATTATAAGAAGTGTGTTCTTGAAATCCACTG
TTCTGCCCTTACTGTCTGTTAGTCTTCCATCTTCCAGGATCTGAAGCATCATGTTGAACACATCAGGATGGGCTTTCTCAATCTCATCAAACAGTACAAC
AGTGTAAGGACGACGCCGAACTGCCTCGGTCAATTGACCACCTTCAGTGTAACCAACATATCCAGGAGGTGAACCAATAAGTTTGGAGACAGTGTGCCTT
TCCATGAATTCACTCATGTCAAGCCGAATCATAGCTTCTTCGGAGCCAAAGTAGTATGCAGCCAATGCTTTGGCCAATTCAGACTTCCCCACACCAGTTG
GACCAGAAAAGATGAAGCTGGCAATGGGACGATTAGGATTTTTTAGTCCAACCCGAGCTCGACGGATAGCCCGACTAATGGCTTTAACTGCTTCATCCTG
ACCAATGACTCGCTTATGTAAAGTCTCTTCCATCTTCAGGAGGCGATCAGATTCATCTTCCAGGATGAGACAATATGCTGTATGTCAGCTTCAGTCACAA
TAGGACCTTCATCCCCTGCCTCAGTCTCTGCCTTGCTCATCTCCTT