CANTATAdb - search

Detailed information on CNT30709039

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU33|ERLL3_ARATH, E-value = 1e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30629401	Glycine max	Vigna unguiculata	44.89	32.6	88.97	281	forward
CNT3085988	Glycine max	Vigna radiata	45.21	48.46	88.69	283	forward
CNT3027583	Glycine max	Populus trichocarpa	15.5	20.29	85.57	97	forward
CNT30174473	Glycine max	Vigna angularis	36.42	89.41	91.67	228	forward

Expression of CNT30709039

Peptides detected in this lncRNA

>peptide 1 (42 aa)
CDLHKPASGTLFIATLQLTIQLKYHQKGRNNDRKLTLHARTN*

>peptide 2 (33 aa)
MPKMFALRAVQRHTAASRSTRPLRREQHGVTGG*

Sequence

>CNT30709039
TTGCGATTTACATAAGCCAGCATCGGGAACTTTATTTATCGCAACACTCCAATTAACCATACAATTAAAATACCACCAAAAAGGAAGGAATAACGATCGG
AAGTTAACCCTCCATGCACGTACAAATTAATCAGAATCACACACTGATGAATAGAATTTGAAAAATAAAAATAAAAAATGGAAAAGCACAACTAGAGCAA
ACCCGAAGCAGAAGAAGGATATAAGATGATATGTGATAGTATAAGCTTAGGCACATTGGAAATCACGTGGGACTTTCCTTGAGCAAACATCGAGAAGCAA
GCTGAGTGAGATTGGAAGGTTGAGAAGCAAGCTGAGTGAGATTGGAAGGTTGAGGTTGATGCCCAAAATGTTTGCTTTGAGGGCAGTGCAAAGGCACACT
GCAGCCTCAAGATCAACGAGACCATTGAGAAGGGAACAGCATGGGGTAACTGGTGGTTGACCCAAAGTCACGTTCAACAACCCGTTTAGCACATTGGCAC
ACACTCCTAGTTTGAGTGCATCACGAGGGCAAGACGCACCGGAACCTCCAGAACCACCAGAACCTCCTGAACCACCTGAGCCTCCAGAACCTCCTGAACC
ACCTGAGCCACCAGAACCTCCTGAAC