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Detailed information on CNT30709011


BLAST search results

BLAST vs Swiss-Prot:
sp|P46486|PSAF_FLATR, E-value = 1e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Glycine maxSetaria viridis17.8440.8180.25162forward
CNT30641545Glycine maxNymphaea colorata26.3228.1284.1239forward
CNT30513785Glycine maxJuglans regia35.1351.2981.19319forward
CNT30371574Glycine maxArabidopsis thaliana28.349.7180.16257forward
CNT30618119Glycine maxSesamum indicum19.0533.7282.66173forward
CNT30273262Glycine maxChenopodium quinoa23.0212.6378.47209forward
CNT3019440Glycine maxCitrullus lanatus29.6370.9879.18269forward
CNT30525128Glycine maxPhaseolus vulgaris30.464.0489.49276forward
CNT30188078Glycine maxSecale cereale20.2618.9982.07184forward
CNT30298665Glycine maxTriticum aestivum17.9525.1982.82163forward
CNT30224070Glycine maxHordeum vulgare6.3926.0187.9358forward
CNT3086176Glycine maxVigna radiata50.6656.8688.48460forward
CNT30540068Glycine maxBrassica napus28.1934.8380.47256forward
CNT30664762Glycine maxTriticum dicoccoides17.9527.4982.82163forward
CNT30313614Glycine maxCamelina sativa27.5364.4381.6250forward
CNT30264705Glycine maxBrassica rapa28.1930.5180.47256forward
CNT308929Glycine maxZea mays20.2661.1382.07184forward
CNT30684883Glycine maxTriticum urartu17.9527.0882.82163forward
CNT30620828Glycine maxCajanus cajan20.2684.0290.76184forward
CNT30148341Glycine maxBrachypodium distachyon8.8127.38580forward
CNT30579105Glycine maxEchinochloa crusgalli20.2617.4282.07184forward
CNT30174403Glycine maxVigna angularis25.6633.5388.41233forward

Expression of CNT30709011

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MYRNSIPGVMNSPQCLWSPLTIRCGNPSPPHSNPCFA*

>peptide 2 (33 aa)
MEERASAAENAFRSEDTLLLLLLLVVLQTMLWA*

>peptide 3 (71 aa)
MEEQDLDILGNEVAVDEFSVGSNGPAETPEEQARSQRNIDDDLLHGGFLLVPDRNQVAPTHPADPSRDVQE*

>peptide 4 (54 aa)
MGGEEDGGEGQRGGERLQVGGHVVVVVVVGGAADDALGLVWGGGRRAWRGWREW*

Sequence

>CNT30709011
GCATGTGTTTGAGAGAGTGTAGCAAGAACTCTTCTTACATTAATTGAATTGGAAGATGAGCGCGTAAAGATCCCATCCACATACAAATTCTCCAGGCTTT
CCTCCAATGTAGCCATCCACCCTCTCTTATCTGAGATCAAACAAAGCAAAGTGAATAAAAATATAAAAATTTAGATATTTGAAAAGTGTAAAAGAGTGAA
TGGAGGAGCAGGACCTAGACATCCTTGGCAATGAGGTCGCCGTTGATGAGTTCTCTGTAGGCAGCAACGGGCCAGCTGAAACCCCTGAAGAGCAAGCGAG
AAGCCAGAGGAACATCGATGATGATCTCCTTCATGGTGGGTTTCTTCTCGTCCCTGATCGCAATCAGGTAGCTCCGACCCACCCAGCCGATCCATCCCGA
GATGTACAGGAATAGTATTCCGGGTGTGATGAACTCACCCCAGTGCCTCTGGTCTCCGCTCACGATCAGGTGCGGCAACCCATCGCCGCCGCACAGCAAC
CCCTGCTTCGCGTAGTTGTCGAACCTCCTCTTCGTCTTCTCCACGCTCGCCTTAATGGCCAGTGCGGGGGCGCTGCCCGCCTCGTAGAGCTTCAGCGACG
ACTCCAGCTTCTTTATCGACTGCTTCTCACGCTTCGCGAACTGCTTCGACTCCTTGCATGGGGTGAGCCCCGAGATGGGCGGAGAGGAGGATGGAGGAGA
GGGCCAGCGCGGCGGAGAACGCCTTCAGGTCGGAGGACACGTTGTTGTTGTTGTTGTTGTTGGTGGTGCTGCAGACGATGCTTTGGGCTTAGTTTGGGGC
GGAGGGCGGCGGGCTTGGAGAGGTTGGAGGGAATGGTGAGAGACATTGTTGGATGCGAGGGGTGTGTGAGATGGGAGTGTGGGGGTGAGAAGAGAAGGGA
AGGTTTTT