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Detailed information on CNT30708944


BLAST search results

BLAST vs Swiss-Prot:
sp|O48561|CATA4_SOYBN, E-value = 7e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532478Glycine maxEucalyptus grandis18.6325.4886.79106forward
CNT30381388Glycine maxManihot esculenta26.3625.7386150forward
CNT30405510Glycine maxBeta vulgaris29.1735.3283.73166forward
CNT30638211Glycine maxCapsicum annuum20.9121.3383.19119forward
CNT30563752Glycine maxActinidia chinensis29.1734.0986.75166forward
CNT30542456Glycine maxBrassica napus32.1642.3680.87183forward
CNT30238041Glycine maxBrassica oleracea32.5124.3481.08185forward
CNT30668803Glycine maxTriticum dicoccoides27.7720.5581.01158forward
CNT3080335Glycine maxBrassica juncea27.7727.8781.01158forward
CNT30368538Glycine maxSorghum bicolor21.2720.1780.99121forward
CNT30370393Glycine maxOryza glumipatula15.9938.7283.5291forward
CNT30154268Glycine maxPrunus persica36.3843.4984.54207forward
CNT30570453Glycine maxVitis vinifera19.6825.5185.71112forward
CNT30576697Glycine maxOryza barthii15.9920.9783.5291forward

Expression of CNT30708944

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MAGQNASCKGIMSSGQVLVTSRGSKSNLSSCSGSIV*

Sequence

>CNT30708944
GCTCAGTCACAAGAAAAAAATGTGAATACTGAATAATGACAAAAGAATAGGCAGCAATATTACCCAATCAGCATGTGCATGAATAATCTAACAGCACTAA
GTAGTTAACAAGGCAACCAGATTTTCAAACAGAAAACAAATAAGAAAATATAAGAAATTAAACATTAACTTACCTCCTCATCCCTGTGAATGAAATTCAT
GAAACCTTCATGATGATTATTGTGGTGAGCACACTTGGGAGCATTAGCAGGAAGTTGCAGATAGTTTGGTCCAAGTCTGTGCCTTTGTGAATCAGCATAA
GAGAATATCCTGGTCTGAAGCATCTTATCATCTGAGTAGTATACACCAGGAACCACAATGGCAGGGCAAAATGCAAGCTGCAAGGGTATAATGTCCTCAG
GCCAAGTCTTAGTAACATCAAGAGGGTCAAAGTCAAATTTGTCTTCATGCTCAGGATCTATTGTCTGAACGAACAGTTTCCACTCAGGATAGTTACCAGC
AGCAATTGAATCATGAAGGTCTTGAGTGGCATGGCTGTGGTTGGCTCCTCCCACCTTAATGGCCTCTTC