Detailed information on CNT30708350


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENB7|YCF68_ORYNI, E-value = 1e-34

BLAST vs NONCODE:
NONORUT005034, E-value = 8e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Glycine maxSetaria viridis36.815.787.41294forward
CNT30556102Glycine maxOryza glaberrima49.6964.8788.92397forward
CNT30610339Glycine maxGossypium raimondii32.7978.6887.02262reverse complement
CNT30479986Glycine maxArabidopsis halleri11.1435.693.2689reverse complement
CNT30646246Glycine maxCannabis sativa17.6547.889.36141reverse complement
CNT30148621Glycine maxBrachypodium distachyon34.4270.8888275forward
CNT30575379Glycine maxOryza barthii25.2846.8786.63202reverse complement
CNT30116753Glycine maxOryza nivara25.2850.3786.14202forward

Expression of CNT30708350

Peptides detected in this lncRNA

>peptide 1 (29 aa)
INILYTSIIPKTKKFKYQQNKKYIKKLLG*

>peptide 2 (31 aa)
MKYYQSFTNTNNIKNDCRINVLHTYMYKNIW*

>peptide 3 (32 aa)
MYEFSRREEPWWSPPDRPDPTSEEKVGSKTKK*

>peptide 4 (36 aa)
MNSREERSRGGPPRIARIPRVKRKLDQRPRSELLPE*

>peptide 5 (92 aa)
MVNNFGNNNIKIVDYKYIYIFVVTEGAFVVTEGVKDQEVSYLSAKHSILLMARSNLLVPVERKKNFSRSSFREGRISKILLIAIFSRPPGKA*

>peptide 6 (30 aa)
MKKRLEWYDPTVTPERKGRSRSSWSVKIRC*

Sequence

>CNT30708350
AATAAATATATTATACACCTCTATAATACCAAAAACAAAAAAATTTAAATATCAACAAAACAAAAAATACATAAAAAAATTGTTAGGATGAAATATTACC
AAAGTTTCACTAACACCAACAACATAAAAAATGACTGCAGAATAAATGTTTTACACACATATATGTATAAAAACATATGGTGAATAATTTCGGTAACAAT
AATATAAAAATTGTAGACTACAAATATATATATATATTTGTAGTGACTGAGGGGGCGTTCGTAGTGACTGAGGGGGTCAAAGACCAAGAAGTGAGTTATT
TATCAGCCAAGCATTCTATTCTTCTTATGGCTAGATCCAATCTCCTGGTCCCTGTGGAAAGGAAAAAGAATTTTTCACGTTCTTCCTTTCGGGAAGGAAG
GATTAGTAAAATCCTATTGATTGCAATTTTCTCCAGACCCCCGGGAAAAGCATGAAAAAAAGGCTCGAATGGTACGATCCCACCGTCACCCCAGAACGAA
AGGGGCGATCTCGTAGTTCTTGGTCTGTGAAGATACGTTGTTAGGTGCTCCGTTTTTTTCCATTGAGGCCAAACCTAAACCTGTGCTCGAGAGATAACTG
TCCATATACTGATAAGGGATGTATGAATTCTCGAGAAGAGAGGAGCCGTGGTGGTCCCCCCCGGATCGCCCGGATCCCACGAGTGAAGAGAAAGTTGGAT
CAAAGACCAAGAAGTGAGTTATTGCCGGAATGAAGGGTTTTGCCACCACCACCAACGGAATAATTTGCTTTGAAGGTAGAAAACATAGAAAATCTTGAA