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Detailed information on CNT30708305


BLAST search results

BLAST vs Swiss-Prot:
sp|P27520|CB215_PEA, E-value = 2e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374000Glycine maxArabidopsis thaliana35.8933.0382.07290forward
CNT30631092Glycine maxVigna unguiculata38.3727.4192.26310forward
CNT3085816Glycine maxVigna radiata34.5343.7390.68279forward
CNT30171926Glycine maxTrifolium pratense55.07100.9185.62445forward
CNT30313266Glycine maxCamelina sativa32.0543.0283.78259forward
CNT3077068Glycine maxBrassica juncea34.1627.1982.25276forward
CNT30326027Glycine maxAsparagus officinalis3853.9582.08307forward
CNT30112551Glycine maxFicus carica34.5345.0786.02279forward
CNT30114814Glycine maxEutrema salsugineum35.7735.0780.97289forward

Expression of CNT30708305

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MTESALRMDPGTWDDQGHTCCFVHAYQLIVTFHNNNNTNNHNVELPNALRSTLDGTAHVGATFAGATGLADQLIELLQSSLTCEC*

>peptide 2 (34 aa)
MENIAKRPFLSSLTFNSANASGSSARPRGFGLPK*

>peptide 3 (65 aa)
MVVKVLNRALASDNGLNKETKHGEHSQATVLEFLDLQLSECIRVISQTKRVWVAQVVKSSLREDL*

>peptide 4 (29 aa)
MHQGHQPDQEGLGCPSSQVLPPRRSVNQP*

Sequence

>CNT30708305
TGAAGCGTAAGAGTTGATATTTTTTAGGGACAGAAATTTCTAATATATATAATATAATGGTTCTCATACAGATTCTTCTGTTAGTGGCATAAGCCCAAGC
ATTGTTGGCAACAGGATCAGCAACATGGTCGTAAAGGTTCTGAATAGGGCCCTTGCCAGTGACAATGGCCTGAACAAAGAAACCAAACATGGAGAACATA
GCCAAGCGACCGTTCTTGAGTTCCTTGACCTTCAACTCAGCGAATGCATCAGGGTCATCAGCCAGACCAAGAGGGTTTGGGTTGCCCAAGTAGTCAAGTC
CTCCCTCCGAGAAGATCTGTGAACCAGCCTTGAACCACACGGCCTCGCCGAATTTCACACCATTCTTCTCAAGGATCTCTGGGAAGGTGCAGCCAAGTGC
ACCAAGCATGGCCCATCTGCTGTGAATCACCTCCAGCTCCCGGTTCCTGGCGAAGGTTTCCGGGTCAGCTGATAGTCCAGCAGTGTCCCATCCGTAGTCA
CCGGGGAATTCTCCGGTCAGGTATGACGGAATCTGCTCTGAGAATGGACCCAGGTACTTGGGACGATCAGGGCCATACCTGTTGTTTTGTTCATGCATAC
CAACTTATAGTTACATTCCATAACAATAATAACACTAATAATCATAATGTTGAGTTACCAAATGCTCTGAGGAGCACTCTTGACGGTACGGCGCATGTTG
GTGCGACCTTTGCCGGCGCCACCGGTCTTGCGGACCAACTCATTGAGCTGCTTCAGAGCAGTTTGACCTGCGAATGCTGATTGCTGAATAGCAGAGGTGG
CCATGATG