CANTATAdb - search

Detailed information on CNT30707566

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 9e-57

BLAST vs NONCODE:
NONMEST003434, E-value = 5e-31

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30702960	Prunus avium	Quercus lobata	6.87	33.25	83.69	141	forward
CNT30379825	Prunus avium	Manihot esculenta	7.26	25.08	83.22	149	forward
CNT3046546	Prunus avium	Prunus dulcis	25.78	49.03	98.87	529	forward
CNT30718271	Prunus avium	Malus domestica golden	2.63	21.6	92.59	54	forward
CNT30154314	Prunus avium	Prunus persica	4.87	37.31	98	100	forward

Expression of CNT30707566

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MFFRKTDDDRKGFREEGFKEKGEGVEEQSKLSNTVAEKLSLSLYHSFCLCGLTLVFLALLCFLGSLVLCLYKPQASG

>peptide 2 (43 aa)
MPLPHSPVELCGFGGSTNLLHWDGFWAEEFQGARVLVLILVLQ*

>peptide 3 (50 aa)
MRSPVYSTLHQLTPIHLSIQFSMKPPKEMISLAFSLPQNRAPLFSLVSPN*

>peptide 4 (39 aa)
MERLVVAKIARDMSPLVLKMREIEPSKVSPELISSFIIS*

Sequence

>CNT30707566
ATTTACTTGAAGAGATAGAATCACACACCATCACATGCTCTTCATGTTACACAATATAGAAAAAGTAGAACAATTAACACTAACAAAAGGAACAGTTTAA
TTACACTGACCCGAAAGGATAACCAGAAATCTCCATAGTCATGCAAGGAACAAAAATTACCAGCAGACCAAAATGGAGAAATCATTACATATAGCGGACT
CATCATCCTAAGAACTAGTAACTAGGACTGAGGAAAACCTCTGCAAATGTCAAAAATTCATTGCAGAAGCACCTGGCTACACCAAACTGGACCTAAAAGG
CTAAAACCCAAACTAGACACAAACTAAAGTTAAAGAAAGAAATAAGCAAAGATTACATTATCATAAGGACTTCATATAGCAGACCAGTCAATCTCCACTG
AAGGGTACTTCTCTAGTCCGAAATTCTCAGCCTCATCCCATTGAGAATCCGAAAAATCCAAGAAGGTAATGTCGGATTCCGGTGAAGAGGACCCGGTTGA
AGACTCAACGGACCGAGAGGGCGAAGATGAGATCTCCGGTCTATAGCACTCTACACCAGTTAACTCCCATTCACCTTTCAATTCAGTTTTCAATGAAACC
TCCGAAGGAGATGATATCGCTGGCTTTCTCTCTGCCGCAGAACAGAGCTCCCCTGTTTTCCCTTGTTTCGCCGAATTAGCAGCCAAACTCTGGCAAATTG
CTTGGAGCTTGGCATCCACGGAGGAATGGAGAGGCTTGTAGTGGCCAAAATCGCCAGAGACATGAGCCCCTTGGTGCTTAAGATGAGGGAAATTGAGCCG
AGCAAAGTCTCCCCTGAGCTTATAAGCAGCTTTATCATAAGCTAAAGCCGCTTCTTCAGCAGTGTCAAAGGTACCAAGCCATAGGCGGGTTCGGTTCTTG
GGAAGTCTAATCTCAGCAACCCATTTGCCCCAATGCCTCTGCCTCACTCCCCTGTAGAGCTTTGTGGGTTTGGAGGGAGCACCAACTTGCTTCATTGGGA
TGGCTTTTGGGCTGAGGAATTTCAGGGTGCGAGGGTTTTGGTGCTGATATTGGTTTTGCAGTGAAGCTGGAGAAGCAAGAGCAGCAATTTGTTCCTTTTG
TTGGAGTTCCTGCTGTTGTTGGAGGACCATTTGGGTTTGGATTTGAAGAATTTGAGATGGGGTAAGTTGGTTAAGCCCTATTGAACCTGTTTGCTCAAAA
CTCACTTGATCAAACATGTGGGTTGTGGATGGTGAGCAAAAGTCAGGGTACAAATTGGGCTGAGAAGAGTAGAAAGGAGAGGTTGGTGAAGAAATAGAAG
AAGAAAAAGATGTCAAAGAAGAGGTTGATGAAACACTTTTCATAAAAGGCATAAGTGCTTTCAGGAGCTGATCGTCCCTCAAGGAATCTGATAAATCTGG
TGTCATTGAGCTGCTGCTGTAAAGATCTATAGCGGTTGCCATGTAGTCACAAAAGGGGTAAAAGCTAGAATATAAGACAGAAAATATATTTCCTTAAAAC
CAACCTGTTTCTTACCAAAATCAAAGAACAGGTAGACTAAATCCAAGAAGAAGAAAAAAAACCCAGATAAAAAGACAAGGTTTTTTTGCACAAAGAAAGA
CTAAACAGGCTTGAAAAAACCAACCTTCGAGGGACAAAAATAAACCCTCCCAGTTGATCACAGAAAAGCTTAAAACTTTATACTGAAAAAAAAAAAAGGA
GAAAAAACCTGGATCACTGTTCTGAATCACCTGCTTTCAGAAATACCCTTCTGGGTTTGCTTTGTTTTATCACAATTGATGTAATTTCCAATTAAGATTC
CCAAAAACAAGCCCCAAAATATGTTCTTTCGAAAAACAGACGACGACAGAAAGGGATTCAGAGAAGAGGGGTTCAAAGAGAAAGGGGAAGGAGTTGAAGA
ACAATCAAAATTATCAAACACAGTTGCAGAAAAGCTCTCACTCTCTCTCTATCACTCTTTTTGTTTGTGTGGCCTCACTTTGGTGTTTTTGGCTCTCTTG
TGCTTCCTTGGGTCACTTGTTCTCTGTTTATATAAGCCCCAAGCCAGTGGCT