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Detailed information on CNT30706792


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT002964, E-value = 1e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671433Prunus aviumSetaria viridis6.4925.0883.9581forward
CNT30532104Prunus aviumEucalyptus grandis13.3744.8983.83167reverse complement
CNT30629098Prunus aviumVigna unguiculata6.6521.6785.5483forward
CNT30493203Prunus aviumOlea europaea10.4133.4286.92130forward
CNT30393905Prunus aviumTriticum turgidum9.2935.6981.9116forward
CNT30540598Prunus aviumBrassica napus23.6232.7880.68295forward
CNT30689838Prunus aviumTriticum urartu9.9341.6183.06124forward
CNT30346665Prunus aviumEragrostis tef13.9349.5782.18174forward
CNT30577134Prunus aviumOryza barthii17.2167.6181.86215forward
CNT30112309Prunus aviumFicus carica17.4570.182.57218forward

Expression of CNT30706792

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MASEIPTTTPTIFIINKVMGGINNDVHLKM*

>peptide 2 (32 aa)
MCSSNPHARYLLHLGIFPTWNRKRRMDLPQGQ*

>peptide 3 (34 aa)
MKHLQLPRTAHFSTSHLSQRHPIASQGYQLQQSI*

Sequence

>CNT30706792
GACCAAACCAAAATAATGGTGGGCATCCTATCTTGTTTACCCAGTAATCCCTTGAGGAAGGGGTAGAGATGCATAATGACCCAGAAGGCGAAAAATAGCC
GACCAAACAATGGACCCCATGAATCATAGCCGTTATTGATGGCGTCTGAGATACCAACGACAACCCCGACTATATTTATTATTAATAAAGTCATGGGAGG
GATCAACAATGATGTCCACTTGAAGATGTAAAGTTCTGAAAATGCTCCATCATCTGCTCCCTTAGATGTAACTGTGAAGTTTGTGTTAACACCAGCCAAA
ACTTTGAGTAGACCCTGGAAGAGAGCAAACAGATGTGATGAAGCACCTCCAATTACCCAGAACTGCTCATTTCTCCACCAGTCATCTATCCCAACGCCAC
CCCATTGCATCTCAAGGATACCAGTTGCAGCAATCGATATGAAGAGAGCCATGAAAATAATACTGGCATAGTTGCTTATCTACATATTCAAGTTAAGAAG
CCAAGAGTTAGAACAGGCATGATTAACGTAATCGAGTTATATCAGCTGTGTCAAGGATGTAATTTTGGACTAAAAACATAGAGATTAAAGGGGGAGGGAA
ATAATACAATGATAGGCATCGCAAGTGTAACAACCTTCCAGTTAAAGTGATTTAGCAAGAATAAATACAGTAACAACTAAAAGCACTCTTAGCTCACATG
TTTTTATTATTGTTAATCCAATATAGTAAAATTTTGCTCACTTCCTTTAAGAGCATATAATCATGGAATTTGGGTTCTAATAATCAGAAACCATATTAAG
CACATTCAACCAGCTCAATATGTTGCTAGAGACCCCAAAACTTCGTATTTGAGACCTATGTGCAGCTCAAACCCTCATGCCAGATATTTGTTACATTTAG
GCATCTTTCCCACATGGAACAGGAAAAGGAGAATGGACTTACCTCAGGGACAATGAATTTCCCAGTCAGAAGACAGATGGCTGGCAGACTACAGTAGACG
ATCAAGGGAAGGGAGGTCCAAGGATACACAACTGAGTTTATATAGGAAAATCGTTCCAACCATTTCAATCCACTCCCATATCCATACCAGATTGGACAAT
GCCTACTCAAGAAAATCTCAACAGATCCAAGGGCCCACCGAAGAACTTGGTGTAAACGATCGGAGAGGTTAATAGGAGCAGATCCTTTGAAAGCAGGAAG
CTTGGGTATGCAGTAGACGGACCGCCATCCATGGCAGTGCATCTTAAAT