« Back to Prunus avium search


Detailed information on CNT30706531


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287172Prunus aviumTriticum aestivum11.933.3386.984forward
CNT30435838Prunus aviumAegilops tauschii11.933.7386.984forward
CNT30658930Prunus aviumTriticum dicoccoides10.9132.2288.3177forward
CNT30680173Prunus aviumTriticum urartu11.934.5786.984forward

Expression of CNT30706531

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MGYRVGPTTKNLEAGALLEALHHRRTGDRPKRLHDDVENRPCQRQLPGQKQPERHRRVYVT

>peptide 2 (47 aa)
MALITTTWYKAASAAPMNVPVMGMVAKCTKNTANPIGKGANDLSTKP*

>peptide 3 (29 aa)
EMRVGMVGVISELKRTHFTAKLHTMSTHI*

Sequence

>CNT30706531
TGGAGATGAGAGTAGGAATGGTCGGTGTTATTTCTGAATTGAAAAGGACACATTTCACTGCCAAATTACATACAATGAGCACTCACATCTGATGGGGGCC
TTTGCCTAAAAAAAAGAAAGGAAACCAGGGCCGTTGATTGTTGAAGCAGATCAAATCAAACACAGGCTTTGCTGCTCATTAACACTGGCTGAAATACGTA
CAAAATACCACCAAATACACTTTAACAACCATACACAGAAAAGTAAATAAACAAACTCGATCGATCGGCTTCTTGAGAGAGCTTGATAAGTACACGTACG
CATCATGTTGACGATCATCATAAACCATTAACACACAAATTTAAGACTTGGTCTTGAAGGGGATGGCTCTGATCACAACCACGTGGTACAAAGCTGCAAG
TGCTGCCCCAATGAATGTTCCAGTGATGGGGATGGTAGCCAAGTGCACCAAGAACACAGCGAACCCAATAGGCAAAGGTGCCAACGATCTCAGCACCAAG
CCCTGATCCCTTGGTGTAGCCATGGGCTACAGAGTTGGCCCCACCACCAAGAACCTCGAAGCTGGAGCTCTTCTCGAAGCCCTTCACCACCGCCGCACCG
GCGATCGCCCCAAGCGTCTGCATGACGATGTAGAAAACCGCCCTTGTCAGAGACAGCTTCCGGGCCAAAAACAGCCCGAACGTCACCGCCGGGTTTATGT
GACCCC