« Back to Prunus avium search


Detailed information on CNT30706519


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43697|TBB5_MAIZE, E-value = 3e-109

BLAST vs NONCODE:
NONMEST001519, E-value = 1e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Prunus aviumSetaria viridis55.4955.3583.48460forward
CNT30522155Prunus aviumSetaria italica3129.2483.27257forward
CNT30641074Prunus aviumNymphaea colorata32.0972.4884.21266forward
CNT30534291Prunus aviumEucalyptus grandis27.3835.6483.7227forward
CNT30516889Prunus aviumJuglans regia29.6740.6681.3246forward
CNT30377262Prunus aviumArabidopsis thaliana37.6453.4283.01312forward
CNT30617295Prunus aviumSesamum indicum25.2150.9884.21209forward
CNT30728062Prunus aviumCorchorus capsularis42.5840.5386.12353forward
CNT30381383Prunus aviumManihot esculenta24.4911.5584.73203forward
CNT30629386Prunus aviumVigna unguiculata18.2158.5380.13151forward
CNT30196370Prunus aviumPisum sativum32.4528.2388.1269forward
CNT30486254Prunus aviumOlea europaea22.9249.6182.63190forward
CNT30708222Prunus aviumGlycine max22.846.986.24189forward
CNT30168132Prunus aviumPistacia vera18.8237.9683.33156forward
CNT3092760Prunus aviumSolanum tuberosum40.6548.782.2337forward
CNT30291318Prunus aviumTriticum aestivum3177.1883.66257forward
CNT30223001Prunus aviumHordeum vulgare18.3454.6885.53152forward
CNT30390564Prunus aviumTriticum turgidum12.0632.8986100forward
CNT30562825Prunus aviumActinidia chinensis41.2561.9688.3342forward
CNT30586804Prunus aviumMusa acuminata27.9930.0581.9232forward
CNT30542792Prunus aviumBrassica napus16.6531.885.51138forward
CNT30511058Prunus aviumSolanum lycopersicum16.6557.7486.23138forward
CNT30553024Prunus aviumOryza glaberrima41.8624.379.54347forward
CNT30442409Prunus aviumAegilops tauschii39.6949.183.28329forward
CNT30253208Prunus aviumAvena sativa48.4933.4484.58402forward
CNT30261872Prunus aviumBrassica rapa48.2545.282.25400forward
CNT30614070Prunus aviumArabis alpina22.3213.3984.86185forward
CNT305432Prunus aviumZea mays22.250.1485.87184forward
CNT30608822Prunus aviumGossypium raimondii32.8140.682.35272forward
CNT30203517Prunus aviumHelianthus annuus47.5335.0584.26394forward
CNT30627268Prunus aviumDaucus carota24.4916.485.71203forward
CNT30681848Prunus aviumTriticum urartu54.1650.7381.74449forward
CNT30722476Prunus aviumTriticum spelta45.4856.3584.08377forward
CNT30341625Prunus aviumEragrostis tef53.845.7483.86446forward
CNT30364844Prunus aviumSorghum bicolor43.5582.881.99361forward
CNT30595966Prunus aviumOryza meridionalis21.4729.0483.71178forward
CNT30369403Prunus aviumOryza glumipatula44.7556.4784.37371forward
CNT30433323Prunus aviumPapaver somniferum39.3229.8883.13326forward
CNT30570854Prunus aviumVitis vinifera17.9774.1391.28149forward
CNT3033661Prunus aviumTheobroma cacao24.4997.688.18203forward
CNT3054138Prunus aviumAmborella trichopoda28.8347.1483.68239forward
CNT3024558Prunus aviumPopulus trichocarpa56.9425.8684.53472forward
CNT30328090Prunus aviumAsparagus officinalis39.8197.6383.64330forward
CNT30330123Prunus aviumDioscorea rotundata32.0926.1386.84266forward
CNT30150328Prunus aviumBrachypodium distachyon7.9621.3687.8866forward
CNT3099978Prunus aviumOryza rufipogon34.2635.0683.1284forward
CNT30575061Prunus aviumOryza barthii50.7846.3184.09421forward
CNT30117026Prunus aviumOryza nivara29.0735.8683.4241forward
CNT30333708Prunus aviumCynara cardunculus38.9639.8881.11323forward

Expression of CNT30706519

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEVEFPMNVDAMDSPLGGMSQTLDFTLFGIHSTK*

>peptide 2 (35 aa)
MWMPWIALWAECHKHLISHCLVSTQQSRKSSCSEH*

>peptide 3 (71 aa)
MAEAVRYRPCLGSAAHIMFLESHICWVNSGTVRARYCWDPREVRGANPTMKKWRRGNGIKLTASFRRSELS*

Sequence

>CNT30706519
TGCAAGATCAACTGAGATAATTAATAGCAAGGAAGATTGATTTACTAGACAGATAGAACAGAAAATTGAACAATTGAACACAAATCAATCGACCGATCCA
GAACAGAACAACAAGGCATGGAAATGTCACATGACTACTTGCAAACAATCACTCCACCTTTCAATAATATCTACTTGGTAGCATAAACTTTCCCCCCACC
AATAAAATTGAACTTGGACAAAGACAAGTGTGGTTTTAAGACTCATCATCTTCCCTCAATACACAAAGTAACACACAAAGATCTCTCATCCACATATCCA
CATATCCACATATCCACATATCCACACTCTAATTTAGGTTTTACCTCTACATTCACGCCTAAACATTTCCTGGATGGAGGTCGAATTCCCGATGAATGTG
GATGCCATGGATAGCCCTCTGGGCGGAATGTCACAAACACTTGATTTCACATTGTTTGGTATCCACTCAACAAAGTAGGAAGAGTTCTTGTTCTGAACAT
TGATCATTTGTTCATCCACCTCTTTAGTGCTCATCTTGCCCCTGAACATGGCTGAGGCAGTGAGGTACCGACCATGCCTGGGATCAGCAGCGCACATCAT
GTTCTTGGAATCCCACATCTGCTGGGTCAATTCTGGGACTGTTAGAGCTCGGTATTGCTGGGATCCACGGGAGGTCAGAGGCGCAAATCCAACCATGAAG
AAGTGGAGACGAGGAAATGGGATCAAGTTGACAGCAAGTTTTCGGAGGTCAGAGTTGAGTTGACCAGGGAAGCGAAGGCAGCAAGTTACCCCACTCATGG
TTGCAGAGATCAAGTGGTTCAGGTCACCA