Detailed information on CNT30706383


BLAST search results

BLAST vs Swiss-Prot:
sp|P92999|GL118_ARATH, E-value = 7e-91

BLAST vs NONCODE:
NONTPRT002878, E-value = 2e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382100Prunus aviumManihot esculenta18.1522.5383.33114forward
CNT3045720Prunus aviumPrunus dulcis88.5492.6797.12556forward
CNT30638659Prunus aviumCapsicum annuum21.3420.2482.09134forward
CNT3090146Prunus aviumSolanum tuberosum21.3417.4781.34134forward
CNT30567662Prunus aviumActinidia chinensis16.5634.4484.62104forward
CNT3061946Prunus aviumArabidopsis lyrata12.7422.798580forward
CNT30155140Prunus aviumPrunus persica29.359.3598.91184forward
CNT30573105Prunus aviumVitis vinifera56.6958.8480.06356forward
CNT3027612Prunus aviumPopulus trichocarpa33.4412.3780210forward

Expression of CNT30706383

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPRVFSPARLSTFTAVTFEPTGFFVFLGF*

>peptide 2 (31 aa)
MRPIGNTNTSPLFNTLVNRRLPSPLDVTKPT*

>peptide 3 (35 aa)
MGGLEPNTALAMVITPGFWLLSPAKATALTCATLS*

>peptide 4 (36 aa)
AFSTYNYCFFLLLIVVVPELFLEIVNHLVVNLEGLG*

Sequence

>CNT30706383
GCTTTTTCCACATATAATTATTGTTTTTTTCTTCTTCTAATTGTTGTCGTACCAGAACTGTTTCTGGAGATAGTCAACCACCTTGTTGTCAACTTGGAAG
GCCTTGGTTAGAACATCAGGATTGATGGGTGGCTTGGAGCCAAACACTGCATTGGCTATGGTGATCACTCCTGGGTTCTGGCTGCTAAGCCCAGCAAAGG
CTACAGCGTTGACATGTGCCACATTGAGTTGAAAATGAATGAGGCCAATTGGGAACACAAACACATCTCCCTTGTTCAACACTTTGGTGAATAGGCGATT
GCCATCACCGTTGGATGTGACGAAACCAACGTAGAGTGTTCCTTCCAAGACCACAAGGATTTCCGTGGCACGAGGGTGAGTGTGAGGAGGGTTTAGGCCA
TTTGGTGCAAAGTCTAAGCGGGCCAAGGATATGCCGAGAGTGTTCAGTCCTGCTAGGTTGTCCACGTTCACAGCTGTCACATTTGAACCAACCGGATTTT
TTGTGTTTCTTGGATTTTGAAGCCCAGAAAAGAAGAAATCATTTGCAATGACAAGCTTTGGGTCCTTGCAGAATTTCCCATTCACAAACACTGTTTGCAC
CAAACAGAAAAAAAGTAATAAAATTTTA