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Detailed information on CNT30706355


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516063Prunus aviumJuglans regia59.4792.5183.59914forward
CNT30701241Prunus aviumQuercus lobata57.7186.4583.99887forward
CNT3061767Prunus aviumArabidopsis lyrata57.9754.5684.4891forward
CNT30609009Prunus aviumGossypium raimondii54.9188.4783.18844forward
CNT30713920Prunus aviumMalus domestica golden35.3310092.82543forward
CNT3026527Prunus aviumPopulus trichocarpa59.0192.8485.45907forward
CNT30326890Prunus aviumAsparagus officinalis59.3473.9185.64912forward

Expression of CNT30706355

Peptides detected in this lncRNA

>peptide 1 (62 aa)
VKHIIQIWTAPKTILACIHNGKDKEQTEEEETDQRLLLRHKTRNQNNLVNALQREQVKVLLK*

>peptide 2 (56 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICSRKTTLNKFCFLGIHKNKT*

>peptide 3 (61 aa)
MSLCWSGGMPSLSWIFALTLSMVSELSTSKVIVFPVRVLTNICIPPRRRSTKWRVDSFWML*

>peptide 4 (30 aa)
MVFPVRVFTNICIPPRSRSTKCRVDSFWML*

Sequence

>CNT30706355
GTAAAACACATCATACAAATTTGGACTGCCCCCAAAACAATTCTTGCCTGCATACACAATGGTAAAGACAAGGAGCAAACAGAGGAAGAAGAAACAGATC
AGAGGCTACTGTTAAGACATAAAACTAGAAACCAAAACAATCTCGTTAATGCACTTCAAAGGGAACAAGTAAAAGTACTTCTAAAATAAAAACAGGGACA
TTTCAAACTAGCAACTGGGGGTACATAGACTAGATTTCAACCGCGGATTCGAATCCTTTGCTTCGATTTTAACCAGACCACATCTCCAATCCGACCATCC
AAAGTTCCAAACACAATATTATAGAGCAATATAGATGCATGTATTAACAGAAATTTCAAATGCTAATAAAAAACAGAGCAGATACATACAAAGCAAGTTT
ATTTATTAACTAGATAGTCTTAGTGTGACCCATCATCCATCGGCCAAGTACGAGAATTCAAAACAAAAAATACTTAACAAAGCCACTGTTCACTGATCAG
AGAAGGATGGAACCACAAGGATCATTCAGAATTCAGAAACCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCAA
GAGTCCTCCCATCCTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTATCAAT
TGTATCCGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCATCCCACCACGCAGTCGAAGCACCAAGTGCAGAGTG
GACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGT
CCTGGATTTTGGCCTTCACATTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTAATGGTTTTCCCAGTCAGAGTTTTCACAAATATCTGCATACCACC
ACGCAGCCGGAGCACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTC
TGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCTGAGCTTTCAACTTCCAAGGTGATTGTCTTCCCGGTAA
GGGTCTTGACAAATATTTGCATACCACCACGGAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTC
AAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCA
ACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATCTGTTCACGCAAAACAACCCTAAATAAATTTTGTTTCTTGGGAATTCATA
AAAACAAAACATGATCTTGGAAAATGATTGATTAAGT