Detailed information on CNT30706335


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT008675, E-value = 5e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712080Prunus aviumGlycine max32.4450.4184.11365forward
CNT30637620Prunus aviumCapsicum annuum21.6912.7187.7244forward
CNT30237858Prunus aviumBrassica oleracea36.6292.1788.11412forward
CNT30146188Prunus aviumMedicago truncatula31.5645.2287.89355forward
CNT30423975Prunus aviumPapaver somniferum60.3669.3683.65679forward
CNT30101053Prunus aviumOryza rufipogon29.6940.1989.52334forward
CNT30580076Prunus aviumEchinochloa crusgalli35.2930.0189.42397forward

Expression of CNT30706335

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSRTAKRPNGGYSEKVSTTIGLVGSIFTIPASPFFKNLGSFSISLPDLLSILVRISPNFTAM*

>peptide 2 (48 aa)
MMHLNRLNFSGEPSWSKSDNHTRLDNTGLHTTHWHSSNTTNLVHILKW*

>peptide 3 (44 aa)
MEGTQRKSPQPLAWWEASSPYLHLRSSKIWAPSQSPYRTSCQSW*

>peptide 4 (41 aa)
MEHRELAEAKELQTNLAKQFKNTQLKYESLKAMHKFASLKF*

>peptide 5 (29 aa)
SNQELKILQSQIYKVEKIIHSTDATKLEN*

Sequence

>CNT30706335
ATCAAACCAAGAATTAAAAATACTCCAAAGCCAAATATATAAGGTTGAAAAAATTATCCATTCAACAGACGCAACAAAACTTGAAAATTAAATAGTCTCA
ACTCTCAACATCCTCCTTAAAACGGCGGAATTGACTCAAACATAAACCAGCAATGTCACCACCGCCTGTCCAGCACCCAATTCTGAGCGCATACACCGGA
GATGGAGCATAGAGAACTAGCAGAAGCAAAAGAACTACAGACTAATCTGGCTAAACAATTTAAAAACACACAACTTAAATATGAGTCTTTAAAAGCGATG
CATAAGTTTGCGTCATTGAAATTTTGATACTGTGACATTATTCTTCACTTCTTCTTGGCAGCAGACTTGGTGACCTTGGCACCACTGGGATCCTTCTTCT
CCACGCTCTTGATAACACCAACAGCAACGGTCTGACGCATGTCACGAACAGCAAAACGACCCAATGGAGGGTACTCAGAGAAAGTCTCCACAACCATTGG
CTTGGTGGGAAGCATCTTCACCATACCTGCATCTCCGTTCTTCAAAAATTTGGGCTCCTTCTCAATCTCCTTACCGGACCTCCTGTCAATCTTGGTGAGG
ATCTCACCGAACTTCACAGCAATGTGAGAAGTGTGGCAATCAAGAACTGGAGCATATCCGTTACCAATCTGACCAGGGTGGTTCATGATGATGACCTGGG
ATGTGAAGTTGGCAGTGCCTCCAGAAGGGCCTCATGATGCATCTCAACAGACTTAACTTCAGTGGTGAGCCCAGTTGGTCCAAAAGTGATAACCATACCA
GGCTTGATAACACCGGTCTCCACACGACCCACTGGCACAGTTCCAATACCACCAATCTTGTACACATCCTGAAGTGGTAGTCGGAGGGGCTTGTCGGAGG
GCCTCTTGGGCTCATTGATCAAGTCAAGAGCCTCAAGAAGGGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAA
CCCAGAGATGGGAACAAAGGCAATTTTGTCCGGGTTGTACCCAACCTTCTTCAGATAGGATGAGACTTCCTTCACGATTTCATCATACCTTGCCTTGGAG
TACTTGGGAGTAGTGGCATCCATCT