« Back to Prunus avium search


Detailed information on CNT30706321


BLAST search results

BLAST vs Swiss-Prot:
sp|P51851|PDC2_PEA, E-value = 4e-114

BLAST vs NONCODE:
NONTCAT001819, E-value = 7e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534838Prunus aviumEucalyptus grandis33.1534.6681.42183forward
CNT30378612Prunus aviumArabidopsis thaliana23.1941.2985.16128forward
CNT3021436Prunus aviumCitrullus lanatus13.9523.9192.2177forward
CNT30157163Prunus aviumPistacia vera46.7458.7784.11258forward
CNT30562763Prunus aviumActinidia chinensis55.4366.6782.68306forward
CNT30146603Prunus aviumMedicago truncatula22.6432.9890.4125forward
CNT30265141Prunus aviumBrassica rapa19.9326.5181.82110forward
CNT30128751Prunus aviumCorymbia citriodora82.2589.1980.4454forward
CNT30362074Prunus aviumSorghum bicolor27.927.3587.01154forward
CNT30355647Prunus aviumLactuca sativa36.7830.3983.25203forward
CNT30369917Prunus aviumOryza glumipatula34.0631.0780.32188forward
CNT30154533Prunus aviumPrunus persica46.5658.5499.61257forward
CNT3026328Prunus aviumPopulus trichocarpa52.3654.7387.54289forward
CNT30113754Prunus aviumFicus carica54.7173.8484.11302forward

Expression of CNT30706321

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRTQPNEGPFAIVTRSGCTMIAFSFLRRREYPTEL*

>peptide 2 (58 aa)
QPAGNLSFWQLNHESPVSAITAVSLDSIFWTCSNRTLTLKGSLGAHCRGCPSGTKILR*

Sequence

>CNT30706321
CGCAACCAGCCGGCAATCTCAGTTTCTGGCAGTTAAACCATGAGTCCCCTGTCTCAGCAATCACAGCTGTTTCACTTGACAGCATCTTTTGGACATGTTC
AAACAGAACATTAACCCTCAAAGGTTCTCTGGGTGCACACTGTAGAGGGTGTCCATCAGGAACAAAGATCCTGCGGTAGTTCTCATGAGCAGTGTTGTTG
TGGTTGAGCTTCTTTGCTAGTGCTCTGAGGAAATCCTTCATGAGAACACAACCAAATGAAGGGCCATTTGCTATTGTCACACGATCGGGCTGCACGATGA
TTGCCTTCTCTTTCTTGAGAAGGAGAGAGTACCCAACAGAGCTGTAGTCATTGAAAATTGGTCCAGCAAACAAGTACGCATCTGCAGACTCCACAATCTC
AGCACAAAAGGCAGTGCTCACGGCGCCCCAATATGTCCCAATGAAATGAGGGTGGTGCTCTGGCACAAGCCCCTTTGCTGAAGGCATCACAGCCAGAGCA
TAACCACTGGCATCAGCTAGTTCAACAAAGGCATCACAGCCAGAGCATAACC