« Back to Prunus avium search


Detailed information on CNT30706279


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 4e-130

BLAST vs NONCODE:
NONSLYT002586, E-value = 8e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693909Prunus aviumOryza sativa31.6313.5678.65192forward
CNT30640134Prunus aviumNymphaea colorata51.7345.6482.48314forward
CNT30547471Prunus aviumIpomoea triloba37.0741.5982.67225forward
CNT30372970Prunus aviumArabidopsis thaliana36.0844.4283.11219forward
CNT3071371Prunus aviumQuercus suber47.94101.3988.32291forward
CNT30405832Prunus aviumBeta vulgaris71.8354.3684.4436forward
CNT30636551Prunus aviumCapsicum annuum70.1864.5583.1426forward
CNT3085191Prunus aviumVigna radiata27.0222.8782.93164forward
CNT30543621Prunus aviumBrassica napus25.5460.5585.81155forward
CNT30312884Prunus aviumCamelina sativa98.1958.9584.4596forward
CNT30263415Prunus aviumBrassica rapa91.9374.884.95558forward
CNT30612508Prunus aviumArabis alpina98.1923.4883.72596forward
CNT301916Prunus aviumZea mays54.280.8482.67329forward
CNT30361348Prunus aviumSorghum bicolor49.7557.4184.77302forward
CNT30119815Prunus aviumCitrus clementina62.2782.3586.24378forward
CNT30557952Prunus aviumPanicum hallii54.8640.8684.38333forward

Expression of CNT30706279

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MTRFINAFPIRSFSSLFIVTPSFVNMGHNLSF*

Sequence

>CNT30706279
CCTCGTACAAGTTCTCAACACGGTATCTCTGGGCAGTTGAAGTAGAGGGAAGGTGAAAGATCATCATTTCCAATAGGGCACTGCTGGCTGGTAGCCAGGT
CTGCATGACACGCTTCATCAACGCCTTCCCCATCAGGTCCTTTTCATCACTCTTCATCGTGACACCAAGCTTTGTCAACATGGGCCACAACTTGTCCTTC
TGATCATTCATGCAGGTGTTGATAATCTGCTTGATGGGTTCATAACAGAACTGAACGAAACCACGCTTGCAGGTAGCAGAACCAGTGTTCTTGCCGGTCC
ATTTCTTGGTAGCTGGGTCAAAGTAGTTCTCTCCCCAGAGCCTTTCCATCATCTTTGATTCATCAACTCCAAACTTGGATGCATACATCTTGGCAAAGTT
GGTCAAAGTAAAAGCCCATCCGTGCAAACCAGCTGAAAAGGCAACTGTTCCTTTCTCTGGATAGACCTGGACATCACCAAGAAGGGGGTCTTCGTATGTA
GCCATAATGACATTAGCATTCTCAATAACCCTCTGGAATGCTTGGTAAGCCTCCTCTCCATCGACCTGGAGCTCAAGGAAGCACCTGTCCGTCTTGTTAA
CAGTCAA