Detailed information on CNT3070604


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535437Quercus suberEucalyptus grandis35.4342.5880.92152forward
CNT30513856Quercus suberJuglans regia36.3649.8482.69156forward
CNT30698271Quercus suberQuercus lobata50.8269.2198.17218forward
CNT30646760Quercus suberRosa chinensis35.236.0480.79151forward
CNT30355349Quercus suberLactuca sativa36.1325.8382.58155forward

Expression of CNT3070604

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RRCSKQGRRSCHRRPKQYQEYQPRHIGLRS*

>peptide 2 (80 aa)
GGAVNKDEDHATEGPSNTKNTNPATLVCVLEGVSLALVPNHSQNCDVKEKKCGNELCNKSSVKGPLGGQSGSCTQSQSKL*

>peptide 3 (37 aa)
MPPKAQAIPRIPTPPHWSAFLRGSVWLLYPITVKTVM*

Sequence

>CNT3070604
CCGGCGGTGCAGTAAACAAGGACGAAGATCATGCCACCGAAGGCCCAAGCAATACCAAGAATACCAACCCCGCCACATTGGTCTGCGTTCTTGAGGGGGT
CAGTCTGGCTCTTGTACCCAATCACAGTCAAAACTGTGATGTAAAGGAAAAGAAGTGTGGCAATGAACTCTGCAATAAGAGCTCTGTAAAAGGACCACTG
GGGGGTCAGTCTGGCTCTTGTACCCAATCACAGTCAAAACTGTGATGTAAAGGAAAAGAAGTGTGGCAATGAACTCTGCAATAAGAGCTCTGTAAAAGGA
CCACTGGGTTAGCTCCTCAGGGTCGATCAATGGAGCTGGAGGTGGGTCATGGTAGTCCTTAGCTGAGTACCATCCTCCTTGCTCTGCAACTTCAACATCC
TTTGTCATTGTGATCACTTAAGCTTAACA