Detailed information on CNT30705838


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550261Prunus aviumIpomoea triloba52.9910095.89876forward
CNT30730415Prunus aviumCorchorus capsularis37.02100.8296.73612forward
CNT30568468Prunus aviumActinidia chinensis42.2398.5995.85698forward
CNT30628164Prunus aviumDaucus carota63.2283.1395.51045forward
CNT3049178Prunus aviumCucumis sativus47.6791.7396.7788forward

Expression of CNT30705838

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVETRTVFDRLRAPNFRSCLMKTSLANAFAVVRLS*

>peptide 2 (39 aa)
LLRLLLPLNDKVQWTSSDVAGSEPPTSPRSEHFTEPFNR*

>peptide 3 (44 aa)
MHPFQKSGFVARISSRITTVIRVVDTIKQTITDLMSHSQFHSLN*

>peptide 4 (44 aa)
MLSQLFVFHKSENFTSDYEIRMPPSVPVNHYFDPEGQQNRTEIL*

>peptide 5 (66 aa)
MSPVLLFIVTTFPCQDWVICAPAAFLGCGSRFSGSLSGIEPYFSVTRHHHGRPLSYHRKLIGQIFE*

>peptide 6 (32 aa)
MKYECPRVSLLIITSIPKANRIGPKSYDVIPC*

>peptide 7 (43 aa)
MIRFSGLLATSRAANHPRRRDPNTSPNHSIGRSDGRCVQRAGM*

>peptide 8 (33 aa)
MSGPGKLHSWWCPSVNSFKFQPCDHTPPGTQKL*

>peptide 9 (44 aa)
MKFQRLPGPVGQGYRLVEYIIVARVRPRTSKSITDLLLPHTSLA*

Sequence

>CNT30705838
TTACTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAGTGGACTTCTAGCGACGTCGCGGGCAGCGAACCACCCACGTCGCCGCGATCCGAACACTTCA
CCGAACCATTCAATCGGTAGAAGCGACGGGCGGTGTGTACAAAGGGCAGGGATGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCATT
GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCATTG
TAGCGCGCGTGCGGCCCAGAACATCTAAGAGCATCACAGACCTGTTATTGCCTCACACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTGGCC
GCGGAGGGATCCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACACATCGCTCCACCAACTAAGAACGGCCATGCAC
CACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCT
TTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCCGATCCCT
GGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATTTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGTTTAATGAAAACATCCTTGGCAAATGCTTT
CGCAGTTGTTCGTCTTTCATAAATCCGAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGAGTGTCCCTGTTAATCATTACTTCGATCCCGAAGG
CCAACAGAATAGGACCGAAATCTTATGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCAC
CGGAGGCACGACCCGGCCAATTAAGGCCAGGAGCGTATCGCCGGCGGACCGGTCGACCCAACCCAAGGTCCAACTACGAGCTTTTTAACTGCAACAACTT
AAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGGTCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATT
ACCGGACTCTATGAGCCCGGTATTGTTATTTATTGTCACTACCTTCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGT
CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTACTTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTATCATCGAAAGTTGATAGGGCAGA
TATTTGAATGATGCGTCGCTAGCACGATGGCTGTGCGATCTGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCAGCCTTTTATCTAA
TAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAGATACCATCAAACAAACTATAACTG
ATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACAT