Detailed information on CNT30705730


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SSQ9|PLDA2_ARATH, E-value = 2e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523111Prunus aviumSetaria italica31.9432.3584.97153forward
CNT30375740Prunus aviumArabidopsis thaliana35.726.6480.7171forward
CNT30729810Prunus aviumCorchorus capsularis31.525.3384.77151forward
CNT3068994Prunus aviumQuercus suber21.7123.2185.58104forward
CNT3046495Prunus aviumPrunus dulcis55.5332.9297.74266forward
CNT30314174Prunus aviumCamelina sativa14.8232.4287.3271forward
CNT3060266Prunus aviumArabidopsis lyrata30.926.1981.76148forward
CNT30134231Prunus aviumLolium perenne30.2754.180.69145forward
CNT30719439Prunus aviumMalus domestica golden87.6861.1489.29420forward
CNT30477502Prunus aviumArabidopsis halleri32.7845.1181.53157forward
CNT3022274Prunus aviumPopulus trichocarpa32.5732.0383.97156forward
CNT3099734Prunus aviumOryza rufipogon31.1120.8183.89149forward

Expression of CNT30705730

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAISESLAPSIDLWLMLADPIIMKDVSKVSFIKFIMVRLT

>peptide 2 (30 aa)
MDLTTCWLPDRQMIWLVGSHGDFRVPGTIH*

Sequence

>CNT30705730
GACGCACTTAAGTAGTAAGGATCGGAGGAAGGTAGTCAGACTTGCCACCTAGGACACGTGCCTTGGTGTCGGGGAAGAATTCACATCCTGGCAACTCGGT
GACGGTTCCTTCGCTGGAAATGCCAATTGGATATCGGAGCAAGTGACCAGGCAAGTCATGATTAAGGGATTCACTTGAATAAAGATCCCAGTATTTGTCA
GCAATCTGGTTCACCTTCGTAACACATTCAACGCTTTCTGGCTGGAGGAACTTCTCGTCGAGCATGCCAAGGTGCTCGTACCATAGTGCCATGCGGAAAC
CATGGATCTGACCACGTGCTGGCTCCCTGACCGACAGATGATATGGTTGGTAGGCTCCCATGGCGATTTCAGAGTCCCTGGCACCATCCATTGATCTCTG
GTTGATGTTGGCAGATCCAATAATAATGAAAGATGTGTCAAAAGTGAGTTTCATAAAGTTTATAATGGTAAGACTTACC