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Detailed information on CNT30705527


BLAST search results

BLAST vs Swiss-Prot:
sp|P17818|CHSY_MATIN, E-value = 4e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Prunus aviumQuercus lobata30.0233.0284.89139forward
CNT30378024Prunus aviumArabidopsis thaliana30.4525.5982.27141forward
CNT30381108Prunus aviumManihot esculenta29.1624.1986.67135forward
CNT30524897Prunus aviumPhaseolus vulgaris31.5323.7885.62146forward
CNT30628839Prunus aviumVigna unguiculata54.8622.3482.68254forward
CNT30195771Prunus aviumPisum sativum40.3912.4784.49187forward
CNT30485883Prunus aviumOlea europaea19.8731.7282.6192forward
CNT30507146Prunus aviumNicotiana attenuata49.2421.4383.33228forward
CNT3045136Prunus aviumPrunus dulcis57.4542.7795.49266forward
CNT30156272Prunus aviumPistacia vera56.5916.9980.92262forward
CNT3096085Prunus aviumSolanum tuberosum55.7254.284.5258forward
CNT30192407Prunus aviumSecale cereale41.929.0478.87194forward
CNT30564019Prunus aviumActinidia chinensis57.4535.983.46266forward
CNT3087878Prunus aviumVigna radiata56.3716.782.76261forward
CNT30171320Prunus aviumTrifolium pratense50.3254.4481.12233forward
CNT30145784Prunus aviumMedicago truncatula44.7119.181.64207forward
CNT30466546Prunus aviumSaccharum spontaneum29.8151.8881.88138forward
CNT30610101Prunus aviumGossypium raimondii55.729.986.82258forward
CNT30646903Prunus aviumRosa chinensis52.2718.3189.67242forward
CNT30680228Prunus aviumTriticum urartu28.9428.3980.6134forward
CNT30365392Prunus aviumSorghum bicolor41.933.4581.96194forward
CNT30355776Prunus aviumLactuca sativa41.933.4584.02194forward
CNT30151821Prunus aviumPrunus persica57.4546.1895.11266forward
CNT30645210Prunus aviumCannabis sativa31.7519.4283.67147forward
CNT3030385Prunus aviumTheobroma cacao2731.3387.2125forward
CNT3022855Prunus aviumPopulus trichocarpa28.7319.1987.97133forward
CNT30103826Prunus aviumOryza rufipogon29.8119.9781.88138forward
CNT30114121Prunus aviumFicus carica57.4516.4686.47266forward

Expression of CNT30705527

Peptides detected in this lncRNA

>peptide 1 (34 aa)
VQSRIVSSNPRCRKASFRLFSMFFEISPGTSLSR*

>peptide 2 (59 aa)
CAIQNSEFQSEMPEGLVQTLLDVLRNKPGNILEQMKCKPNFTEMSVDGSITVGKDGLGC*

Sequence

>CNT30705527
GTGTGCAATCCAGAATAGTGAGTTCCAATCCGAGATGCCGGAAGGCCTCGTTCAGACTCTTCTCGATGTTCTTCGAAATAAGCCCGGGAACATCCTTGAG
CAGATGAAATGTAAGCCCAACTTCACGGAGATGTCCGTCGATGGCTCCATCACTGTCGGGAAGGATGGTTTGGGCTGCTGAGACCACTTCAAATAGGGGT
GGGTATCACTGGGCCCACGGAAGGTGACGGCGGTGATCTCCGAGCACACAACGAGAACACGAGCACCCCTGTTGTTCTCGGCCAAGTCCTTGGCCAACCG
GAGCACTGTGCCGCCGGCAAAACAGCCTTGTTGGTACATCATGAGGCGCTTGACGGATGAGCGGAGGCCCAAGAGCTTGGTGAGCTGGTAATCGGCCCCG
GGCATGTCCACACCACTAGTGGTGCAAAAGACCAAATGGGTAATTTTGGACTTTGGCTGGCCC