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Detailed information on CNT30705326


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONSLYT002586, E-value = 4e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Prunus aviumSetaria viridis19.6133.8785.32252forward
CNT30640184Prunus aviumNymphaea colorata23.4239.7685.38301forward
CNT30512774Prunus aviumJuglans regia65.2967.2386.53839forward
CNT30373037Prunus aviumArabidopsis thaliana38.6824.485.11497forward
CNT3019595Prunus aviumCitrullus lanatus40.794.2382.03523forward
CNT30728649Prunus aviumCorchorus capsularis25.630.2188.45329forward
CNT30192963Prunus aviumSecale cereale20.0848.3184.11258forward
CNT30224330Prunus aviumHordeum vulgare37.5910085.3483forward
CNT30391299Prunus aviumTriticum turgidum21.4850.1884.06276forward
CNT30561656Prunus aviumActinidia chinensis21.2519.586.45273forward
CNT30510528Prunus aviumSolanum lycopersicum73.9373.7683.58950forward
CNT30143750Prunus aviumMedicago truncatula33.2355.7484.78427forward
CNT30441049Prunus aviumAegilops tauschii27.6393.9285.35355forward
CNT30665536Prunus aviumTriticum dicoccoides48.0293.6383.95617forward
CNT30309902Prunus aviumCamelina sativa53.8561.0283.67692forward
CNT30263667Prunus aviumBrassica rapa52.3795.1983.36673forward
CNT30612239Prunus aviumArabis alpina7335.7282.62938forward
CNT30448454Prunus aviumSaccharum spontaneum68.5647.7882.41881forward
CNT30212259Prunus aviumHelianthus annuus16.1931.1886.06208forward
CNT30716232Prunus aviumMalus domestica golden73.0770.8191.27939forward
CNT30683923Prunus aviumTriticum urartu20.6228.9683.4265forward
CNT30479087Prunus aviumArabidopsis halleri7.6333.6891.8498forward
CNT30361949Prunus aviumSorghum bicolor29.3444.6783.02377forward
CNT30596122Prunus aviumOryza meridionalis16.9631.582.57218forward
CNT30359537Prunus aviumLactuca sativa14.2427.7786.89183forward
CNT30370118Prunus aviumOryza glumipatula24.7551.4684.28318forward
CNT3054398Prunus aviumAmborella trichopoda33.0761.9580.24425forward
CNT3024028Prunus aviumPopulus trichocarpa30.7453.4584.05395forward
CNT30575986Prunus aviumOryza barthii24.7526.9383.96318forward

Expression of CNT30705326

Peptides detected in this lncRNA

>peptide 1 (30 aa)
GYACWVTCSSQYDKTSPGQSHGKTQQGQIL*

>peptide 2 (33 aa)
MILTFKPVWTLPAKTRPKAKNRPLSDAGIILDT*

>peptide 3 (32 aa)
MTRFINAFPIRSFSSLFIVTPSFVNMGHNLSF*

>peptide 4 (92 aa)
RLCLLGDLLITVRQDFSRTVSRKDTTGSDFIISAPPMKSSCRSFKQISRWSSPAPAIMCSPDSSMEQTTIGSDLARRFRPSTSLGRSEATLH*

>peptide 5 (51 aa)
MEFTSTSNNVLTGFLNGTDNHRIRLGQTFQTFNKFGKVRSHLALNSNTHNR*

Sequence

>CNT30705326
ACGGTTATGCTTGTTGGGTGACTTGCTCATCACAGTACGACAAGACTTCTCCAGGACAGTCTCACGGAAAGACACAACAGGGTCAGATTTTATAATCTCA
GCTCCACCCATGAAATCATCTTGTAGATCCTTCAAACAGATCTCAAGATGGAGTTCACCAGCACCAGCAATAATGTGCTCACCGGATTCCTCAATGGAAC
AGACAACCATAGGATCAGACTTGGCCAGACGTTTCAGACCTTCAACAAGTTTGGGAAGGTCAGAAGCCACCTTGCATTGAACAGCAACACGCACAACAGG
TGAGACCGAGAACTTCATAGCACGAATGGGGTGAGACCGAGAACTTCATAGCACGAATGGGGTGAGCATCCACTTCCTTCTCATTTGTCAATGTAGCATT
CTTGGTGATAAACTGATCAAGACCAACCAAGGCAACAGTGTTACCACAAGGAACATCCTCAACAGTTTCTTGTTTCTTTCCCATCCAAATAACAGTCCTC
TGCACGTTCTTAACATACAAATCCTTCTTCTCTCCAGGAACATAATTTGGACCCATGATTCTAACCTTCAAACCTGTCTGGACTTTACCAGCAAAGACAC
GACCAAAGGCAAAGAATCGACCCTTGTCAGATGCGGGAATCATCTTAGATACATAGAGCATAAGAGGCCCTTCGGGATCACAGTTCCTGATAGCATTTGC
ATATTGATCATCAAGGGGACCCTCGTACAAGTTCTCAACACGGTATCTCTGGGCAGTTGAAGGAGAGGGAAGGTGAAAAATCATCATTTCCAATAGGGCA
CTGCTGGCTGGTAGCCAGGTCTGCATGACACGCTTCATCAACGCCTTCCCCATCAGGTCCTTTTCATCACTCTTCATCGTGACACCAAGCTTTGTCAACA
TGGGCCACAACTTGTCCTTCTGATCATTCATGCAGATGTTGATAATCTGCTTGATGGGTTCATAACAGAACTGAACGAAACCACGCTTGCAGGTAGCAGA
ACCAGTGTTCTTGCCGGTCCATTTCTTGGTAGCTGGGTCAAAGTAGTTCTCTCCCCAGAGCCTTTCCATCATCTTTGATTCATCAACTCCAAACTTGGAT
GCATACATCTTGGCAAAGTTGGTCAAAGTAAAAGCCCATCCGTGCAAACCAGCTGAAAAGGCAACTGTTCCTTTCTCTGGATAGACCATGACATCACCAA
GAAGGGGGTCTTCGTATGTAGCCATAATGACATTAGCATTCTCAATAACCCTCTGGAATGTTTGGTAAGCCTCCTCTCCTTCGAC