Detailed information on CNT3070514


BLAST search results

BLAST vs Swiss-Prot:
sp|P40691|A115_TOBAC, E-value = 4e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529444Quercus suberEucalyptus grandis40.9835.0986100forward
CNT30316851Quercus suberCorylus avellana85.6645.5385.65209forward
CNT30517065Quercus suberJuglans regia83.6170.3482.84204forward
CNT30699837Quercus suberQuercus lobata45.4947.2381.98111forward
CNT30566887Quercus suberActinidia chinensis57.3845.4580.71140forward
CNT30586912Quercus suberMusa acuminata38.9328.1186.3295forward
CNT30127153Quercus suberCorymbia citriodora49.1844.1283.33120forward
CNT30343741Quercus suberEragrostis tef67.6267.6280165forward
CNT30570768Quercus suberVitis vinifera74.5936.6282.42182forward
CNT30704146Quercus suberPrunus avium77.4626.6282.01189forward
CNT3022423Quercus suberPopulus trichocarpa74.5917.780.77182forward
CNT30329110Quercus suberAsparagus officinalis26.2312.5790.6264forward
CNT30120938Quercus suberCitrus clementina52.0559.6281.1127forward
CNT30331317Quercus suberDioscorea rotundata56.9742.7783.45139forward
CNT30558432Quercus suberPanicum hallii22.9519.2489.2956forward

Expression of CNT3070514

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPDIPMHPKPCADTSSPCEPSFILSTLPPIINSLLLLF

>peptide 2 (50 aa)
LSKEDFIGEGAIDVGGVEEGDTSVDGMVDERDHVFIRLWRTVDAGHSHAP*

Sequence

>CNT3070514
CCTTTCCAAGGAGGATTTCATTGGTGAAGGGGCCATAGACGTCGGAGGTGTCGAGGAAGGTGACACCAGCGTGGATGGCATGGTGGATGAGAGAGATCAT
GTCTTCATCAGGCTTTGGAGGACCGTAGATGCCGGACATTCCCATGCACCCTAAACCTTGTGCAGACACCTCCAGTCCCTGTGAACCCAGCTTTATTCTC
TCTACTCTTCCACCCATTATTAATTCTTTGCTTCTTCTTTTTTT