Detailed information on CNT30704968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT002539, E-value = 2e-13

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535437Prunus aviumEucalyptus grandis11.228.2982.18101forward
CNT30513856Prunus aviumJuglans regia15.8545.6982.52143forward
CNT30281447Prunus aviumChenopodium quinoa10.8620.5582.6598forward
CNT30404916Prunus aviumBeta vulgaris9.8721.9883.1589forward
CNT30504332Prunus aviumNicotiana attenuata9.224.286.7583forward
CNT30711465Prunus aviumGlycine max11.7522.786.79106forward
CNT30163276Prunus aviumPistacia vera14.0841.2384.25127forward
CNT30589490Prunus aviumMusa acuminata12.864082.76116forward
CNT3085870Prunus aviumVigna radiata11.9724.684.26108forward
CNT30552699Prunus aviumOryza glaberrima12.5328.7582.3113forward
CNT3062229Prunus aviumArabidopsis lyrata11.7523.0482.08106forward
CNT30261241Prunus aviumBrassica rapa8.5421.1584.4277forward
CNT30613102Prunus aviumArabis alpina11.534085.58104forward
CNT30227661Prunus aviumAnanas comosus11.6446.0588.57105forward
CNT30646760Prunus aviumRosa chinensis19.1841.2986.13173forward
CNT30595656Prunus aviumOryza meridionalis10.4228.1484.0494forward
CNT30354871Prunus aviumLactuca sativa13.8638.2384125forward
CNT30570969Prunus aviumVitis vinifera8.226.9186.4974forward
CNT30120694Prunus aviumCitrus clementina14.7554.5189.47133forward

Expression of CNT30704968

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MESLKIFKHGGCNGCTNEGSNPKNPLQTKRWRKSLHIRYNITKLKLEK*

>peptide 2 (34 aa)
GNENDIEVNSKASVWRSSKGYKKLLLFNLTVSTT*

Sequence

>CNT30704968
ATGGAAATGAAAATGACATTGAAGTAAATTCAAAGGCAAGTGTTTGGAGAAGCAGTAAGGGGTACAAAAAGCTCCTCCTTTTCAACCTGACTGTATCTAC
AACTTAATGACCCTCTCAGCCCCTCTTTCTAAAGGAAATTGAGAGAGAGGAGAAAAAGAAACCTTCATACACAAGCATAAGCTAAAAGCACATATAATAA
ATACTAGCCGTTATAAAAGCACAAATAATAAATACTAGCCATTGTAACTTATTCTTTTTCAAATCCCATGATGCCTTCTTCCATTGTTTCCCACCCTAAC
CATGACAAAGGAAGCAACTTCAATTCATGGAGTCTCTGAAAATATTCAAACATGGGGGCTGCAATGGCTGCACCAATGAAGGGTCCAACCCAAAAAATCC
ACTGCAAACAAAAAGATGGAGGAAAAGTTTACACATAAGATACAATATCACAAAACTAAAATTAGAAAAATAATAATAATAAATAAAAGTGATTAAATAT
TATATACATACTTGGTCATCCCAAGCCTTGTCTTTGTTGTAGATGACAGCAGCTCCAAGACTCCTAGCAGGGTTGATGCCAGTGCCAGTGATTGGGATTG
TGGCCAAGTGAACAATGAACACAGCAAACCCAATTGGCATAAGCACAGTGACATAGAGGAAAAGAAGAGTGGCTATGAACTCAGCTATGAGAGCTCTGTA
AAAGGACCATTTGGTGAGCTCCACTGCATCGAAGAGTGGTGCAGGAGGTGGGTCATGGTAGTCCTTGGCTGAGAAAGAGCCTCTCTCTGCAACTTCAACG
TCCTTGGCCATTAAGCTTAATTAGCTAAAGCTTCAGAGAGTTTGGGAGAAACAGAGAAGCAGGGGAGCTGAGGCTAAAGAAAAACAGAGTCTTTGCTTTT
GA