Detailed information on CNT30704835


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381388Prunus aviumManihot esculenta72.9137.3982.57218forward
CNT30305192Prunus aviumTriticum aestivum45.8225.2882.48137forward
CNT30668803Prunus aviumTriticum dicoccoides64.8825.2381.96194forward
CNT30370393Prunus aviumOryza glumipatula37.4647.6683.93112forward
CNT30576697Prunus aviumOryza barthii56.8639.1782.35170forward

Expression of CNT30704835

Peptides detected in this lncRNA

>peptide 1 (50 aa)
KNIFRPDTRDNKCRVKRKLFILCKEVIDVFIQNQTANWLQGKNIFRPGLS*

>peptide 2 (61 aa)
RISSGQIPGTTNAGLNASCSFSAKKLSMFLFRTKRPTGCRGRISSGQVLVKSRGSKSNLSS*

Sequence

>CNT30704835
GAAGAATATCTTCAGGCCAGATACCAGGGACAACAAATGCAGGGTTAAACGCAAGTTGTTCATTCTCTGCAAAGAAGTTATCGATGTTTTTATTCAGAAC
CAAACGGCCAACTGGCTGCAGGGGAAGAATATCTTCAGGCCAGGTCTTAGTTAAGTCAAGAGGGTCAAAGTCAAATCTGTCCTCGTGATCAGGATCCATT
GTCTGAATATAAAGTTTCCACTCAGGGTAGTTGCCAGCTGCAATGGAGTCATAGAGGTCCTTGGTAGCATGGCTGTGATTAGCTCCTCCAACCTTAATA