Detailed information on CNT30704829


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 1e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674192Prunus aviumSetaria viridis10.9530.0985.2968forward
CNT30317874Prunus aviumCorylus avellana15.338.9388.4295forward
CNT30398713Prunus aviumTriticum turgidum15.334.9387.3795forward
CNT30238041Prunus aviumBrassica oleracea24.482079.61152forward
CNT30511681Prunus aviumSolanum lycopersicum12.8824.188.7580forward
CNT30611006Prunus aviumArabis alpina11.4323.3685.9271forward
CNT308572Prunus aviumZea mays16.7535.8687.5104forward
CNT30368346Prunus aviumSorghum bicolor16.7538.5287.5104forward
CNT30359648Prunus aviumLactuca sativa23.0336.6783.22143forward
CNT3051600Prunus aviumAmborella trichopoda13.8522.3486.0586forward

Expression of CNT30704829

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSDLKESLCTGSPSMDNTLWDSFSIEGCKFLHQMIVLKENW

>peptide 2 (50 aa)
MAGQNASCSFSAKKLSMFLFRTKRPTGCRGRISSGQVLVKSRGSKSNLSS*

>peptide 3 (29 aa)
MAVISSSNLNSFILQQTLDSTSRKSAQVS*

>peptide 4 (36 aa)
EIHESLMMIVMMRILGSIHWELQIVRAKTVPLSIRI*

>peptide 5 (57 aa)
MRRFEFGATYHLNSRHQGQQWQGKTQVVHSLQRSYQCFYSEPNGQLAAEEEYLQARS*

Sequence

>CNT30704829
TGAAATTCATGAATCCCTCATGATGATTGTTATGATGAGAATTCTTGGGAGCATTCACTGGGAGCTGCAGATAGTTCGGGCCAAGACGGTGCCTCTGAGT
ATCAGAATATGAGAAGATTCGAGTTTGGAGCAACTTATCATCTGAATAGTAGACACCAGGGACAACAATGGCAGGGCAAAACGCAAGTTGTTCATTCTCT
GCAAAGAAGTTATCAATGTTTTTATTCAGAACCAAACGGCCAACTGGCTGCAGAGGAAGAATATCTTCAGGCCAGGTCTTAGTTAAGTCAAGAGGGTCAA
AGTCAAATCTGTCCTCGTGATCAGGATCCATTGTCTGAATATAAAGTTTCCACTCAGGGTAGTTGCCAGCTGCAATGGAGTCATAGAGGTCCTTGGTAGC
ATGGCTGTGATTAGCTCCTCCAACCTTAATAGCTTCATCCTCCAACAAACACTTGACTCCACAAGTAGGAAGTCAGCACAAGTAAGCTGAGAAATATCAT
GAGTGACCTCAAAGAATCCCTTTGCACTGGCTCCCCTAGCATGGACAACACGCTCTGGGATTCGTTCTCTATCGAAGGTTGCAAGTTTCTCCACCAGATG
ATAGTCCTCAAGGAGAACTGG