Detailed information on CNT30704506


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FID6|Y5392_ARATH, E-value = 2e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317114Prunus aviumCorylus avellana38.8522.0382.95176forward
CNT30512692Prunus aviumJuglans regia34.6619.6782.17157forward
CNT30560302Prunus aviumActinidia chinensis30.2410.9581.75137forward

Expression of CNT30704506

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLTWEVLPMLATSLIKSSALPLDSLRTFTATTRPSGSLPLYTKPNILFLDMHTIQAMIMRIPETPAEMPILNNSSSYAFY*

>peptide 2 (58 aa)
SGAMYPAVPLSPIMDTILSFVLHSLARPKSAIFGQKFLSKRMFCGLMSRCRILVLHPR*

Sequence

>CNT30704506
CTTCTGGTGCAATGTATCCTGCAGTTCCTCTGAGCCCCATCATGGATACAATACTCTCCTTCGTTTTGCATAGTTTGGCAAGGCCGAAATCAGCGATTTT
TGGGCAAAAATTTTTGTCCAAAAGAATGTTCTGTGGCTTGATGTCAAGATGCAGAATTCTCGTGTTACATCCACGGTAATCCAGAAAGAGTGACAATGTT
GACATGGGAGGTTCTACCAATGCTAGCAACTTCATTAATAAAGTCTTCTGCATTACCCTTGGACTCGCTTAGGACTTTCACCGCCACGACAAGGCCATCT
GGCAGCCTGCCTTTGTACACGAAACCCAACATTCTTTTCCTTGATATGCATACAATACAAGCAATGATTATGAGGATCCCCGAAACACCAGCCGAAATGC
CTATATTGAACAATTCTTCAAGTTATGCATTTTATTGATATGTGAAAGAAAGC