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Detailed information on CNT30704154


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316651Prunus aviumCorylus avellana26.4242.6885.24210forward
CNT30700582Prunus aviumQuercus lobata42.6484.9684.37339forward
CNT30500052Prunus aviumCoffea canephora20.6362.682.32164forward
CNT3070513Prunus aviumQuercus suber43.7751.183.91348forward
CNT3096605Prunus aviumSolanum tuberosum22.2621.1581.92177forward
CNT30566880Prunus aviumActinidia chinensis28.1824.1680.36224forward
CNT30586652Prunus aviumMusa acuminata22.5220.0480.45179forward
CNT30543366Prunus aviumBrassica napus13.8424.2881.82110forward
CNT30146672Prunus aviumMedicago truncatula17.8659.9286.62142forward
CNT3060034Prunus aviumArabidopsis lyrata17.2337.8581.75137forward
CNT30206611Prunus aviumHelianthus annuus11.1925.2883.1589forward
CNT30479817Prunus aviumArabidopsis halleri15.3533.1582.79122forward
CNT30152051Prunus aviumPrunus persica87.9289.0497.71699forward
CNT30570762Prunus aviumVitis vinifera24.5346.9983.08195forward
CNT3022456Prunus aviumPopulus trichocarpa23.927.380190forward
CNT30328920Prunus aviumAsparagus officinalis22.5229.5983.24179forward
CNT30120862Prunus aviumCitrus clementina15.622.7982.26124forward
CNT30114984Prunus aviumEutrema salsugineum16.3545.1483.85130forward

Expression of CNT30704154

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTSQKAHAHVAFHEDTGGVSEFFQVLKSF*

Sequence

>CNT30704154
CTTCGCTTGACCCCAGATTATTTCATACTTTTGGATACTCATAAAACGTGATGAAATCTGCGTACAAAATGTCGAACGTCTCAAAGTCAGTCATTACATA
CCACTTCACATGAACTACTTATTCTCATAACGGTAAGGAAACTCACAAAGCTCATGAGGTACAAAGAAGCATTATGACATCACAAAAGGCACATGCTCAT
GTGGCTTTCCATGAAGACACTGGAGGAGTTTCAGAGTTCTTCCAAGTACTAAAGTCATTCTGATATCTGTCCCCTTTAACGGCATCAGCAGAAGCAAAAG
ATTCAAGCTCAGCCAGTTCTTCTGGTGTCAGTTTCACAGAGAGAGCACCAATGTTCTGGTTAAAATTCTCAATCTTGGTGGTTCCGGGTATCGGACACAC
ATCATTTCCTTGGTGATGAACCCAGGCCAGTGCTAGTTGAGATGGGGTGCACCCCTTCCTTGCTGCAAGATCACTAACCCGCTCAAATATTGCTTTATTA
TGCTCTAGGTTTTCGGCTTGGAACCTGGGTAGAGACTGCAACCAACAAAGTAATCAAGGTTAAAATGACTTTATGAAAATGATATGATAAAGAGGAGGCA
CAATTCAAAGGCCCTGATAGGAGAGTTCTCGCCTGCTAGGAGAGATTACTAAAACTTGTGAGATCAATTACTAATTTGAGGACTTTCTAGGAGATAGAAG
GACATTCACAATGCTACTAATTTTCTCTAATGTGCATGCACTTGTGCACTTGAAAATAAATATCTATTTGGCATATCAACATACCTTTCGGAAAT