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Detailed information on CNT30704146


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692619Prunus aviumOryza sativa23.169.4982.32164forward
CNT30529444Prunus aviumEucalyptus grandis26.967.0286.91191forward
CNT30316771Prunus aviumCorylus avellana27.1842.1488.6193forward
CNT30517065Prunus aviumJuglans regia29.1571.3883.09207forward
CNT30618048Prunus aviumSesamum indicum23.5246.5282.63167forward
CNT3070514Prunus aviumQuercus suber26.6277.4682.01189forward
CNT30221766Prunus aviumHordeum vulgare10.5627.2785.3375forward
CNT30566887Prunus aviumActinidia chinensis22.2551.384.81158forward
CNT30586912Prunus aviumMusa acuminata25.4953.5582.87181forward
CNT30131974Prunus aviumLolium perenne9.8622.9585.7170forward
CNT30127153Prunus aviumCorymbia citriodora26.4869.1286.7188forward
CNT30343741Prunus aviumEragrostis tef24.2370.4983.72172forward
CNT30479821Prunus aviumArabidopsis halleri7.8926.7987.556forward
CNT30570768Prunus aviumVitis vinifera28.5940.8584.24203forward
CNT3022517Prunus aviumPopulus trichocarpa28.0320.2980.9199forward
CNT30329110Prunus aviumAsparagus officinalis25.6335.7682.97182forward
CNT30331317Prunus aviumDioscorea rotundata22.6849.5487.58161forward
CNT30558432Prunus aviumPanicum hallii16.3439.8684.48116forward
CNT30333597Prunus aviumCynara cardunculus15.0724.4983.18107forward

Expression of CNT30704146

Peptides detected in this lncRNA

>peptide 1 (79 aa)
LHHHQSQLIEKSKQNPKKQLHLSLSLSMLVLGWLSNLNTGTRVNTTQFTSSLIHPIQQYKQNPQSNCTNYCLSQCLCLI*

>peptide 2 (34 aa)
MVDETDHVCVGLGRAIEGRHAHTAQALSRDLKAL*

>peptide 3 (29 aa)
MSEVSRKVTPESMAWWMRLIMSASGLGGP*

Sequence

>CNT30704146
CTTCATCATCATCAATCACAATTAATTGAAAAATCTAAACAAAACCCAAAAAAGCAATTACATTTATCATTGTCTCTCTCAATGCTTGTGCTTGGCTGGC
TTAGTAACTTAAATACAGGAACCAGAGTGAACACAACCCAATTCACTTCATCACTAATTCATCCCATTCAACAATACAAACAAAACCCACAAAGCAATTG
TACAAATTATTGTCTCTCTCAGTGCTTGTGCTTGATTTAGCAACTTAAATACTGGAACAAGACTGAACCAAACCAAACCCAATTCAGTTCATCATCAACT
CATCCCATTTGACATCCCAAACAAACCCAAAAAGCAATTGATACAAATTAAGAGCAAATATTAAGAAGCAAAGTCAAGGTTAGTGGCGTACCTTGCCAAG
CAGAATTTCGTTGGTGAAGGGGCCGTAGATGTCAGAGGTGTCGAGGAAGGTGACGCCGGAGTCAATGGCATGGTGGATGAGACTGATCATGTCTGCGTCG
GGCTTGGGAGGGCCATAGAAGGCAGACATGCCCATACAGCCCAGGCCTTGAGCCGAGACCTCAAGGCCCTGTGAACCCAACTTGATCCTCCTCACTCCTG
CTGCCATTTTGGAACTGTGGTTTTCTGTGTTTTCTGAACTCAAGCAGCAAAGTGAAGGACTGATAATACCTCTTGCTTCTCACTAGTTTTTATATATAAA
GATATCTCTA