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Detailed information on CNT30704079


BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 1e-20

BLAST vs NONCODE:
NONMEST004066, E-value = 1e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315049Prunus aviumCorylus avellana55.9623.283.23155forward
CNT30515299Prunus aviumJuglans regia59.9333.3383.73166forward
CNT30380224Prunus aviumManihot esculenta38.6318.885.05107forward
CNT30710115Prunus aviumGlycine max37.1825.1285.44103forward
CNT3044856Prunus aviumPrunus dulcis42.68.8396.61118forward
CNT3090378Prunus aviumSolanum tuberosum59.5741.7783.03165forward
CNT30585986Prunus aviumMusa acuminata21.668.8488.3360forward
CNT30468819Prunus aviumSaccharum spontaneum51.6217.7981.82143forward
CNT30232688Prunus aviumAnanas comosus26.7121.9686.4974forward
CNT30650912Prunus aviumRosa chinensis59.5722.7386.67165forward
CNT30626852Prunus aviumDaucus carota54.8717.5583.55152forward
CNT30477290Prunus aviumArabidopsis halleri35.3815.8682.6598forward
CNT30621639Prunus aviumCajanus cajan59.5716.8984.24165forward
CNT3024510Prunus aviumPopulus trichocarpa59.2129.3481.1164forward
CNT3036985Prunus aviumCucumis melo38.2718.583.96106forward
CNT30723266Prunus aviumLupinus angustifolius59.5724.779.39165forward

Expression of CNT30704079

Peptides detected in this lncRNA

>peptide 1 (39 aa)
RFFKGRVAVAGAGAGTEEDGNSGKLSLALPPRMRLAASS*

Sequence

>CNT30704079
ACCGCTTCTTCAAAGGCCGTGTTGCAGTTGCAGGAGCAGGAGCTGGAACTGAAGAAGACGGTAATTCCGGAAAGTTGAGCTTGGCTTTGCCGCCGCGGAT
GCGCCTGGCGGCGTCATCGTAGGCTCTGGCGGCTTCCTCTGCTGTGTTGTAAGTGCCGAGCCAGACACGGACGCCTTTGTGCGGATCACGAATCTCAGCT
GCCCATTTGCCCCACGGCCTCTGTCTTATTCCTCTGAGGAGGAGTGGTCTAAGCCAAGGAAGTCAGAGATGGTGTCG