Detailed information on CNT30703860


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XT99|AKR2_ORYSJ, E-value = 5e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692748Quercus lobataOryza sativa39.4824.2183.18107forward
CNT30639490Quercus lobataNymphaea colorata45.0218.3584.43122forward
CNT30500052Quercus lobataCoffea canephora60.1562.2184.05163forward
CNT30492602Quercus lobataOlea europaea52.7721.3881.12143forward
CNT30146672Quercus lobataMedicago truncatula64.9474.2685.8176forward
CNT3059952Quercus lobataArabidopsis lyrata41.3333.3383.93112forward
CNT3076889Quercus lobataBrassica juncea41.3325.8183.04112forward
CNT30206611Quercus lobataHelianthus annuus29.5222.7386.2580forward
CNT30479816Quercus lobataArabidopsis halleri39.4812.6585.05107forward
CNT30570762Quercus lobataVitis vinifera60.1539.2887.73163forward
CNT30101518Quercus lobataOryza rufipogon39.4844.2183.18107forward
CNT30114984Quercus lobataEutrema salsugineum45.3942.7185.37123forward

Expression of CNT30703860

Peptides detected in this lncRNA

>peptide 1 (46 aa)
VGFQNPSKLQPPSHICRPSRHPQQQMIQVQPFLLVSVSQTELQCFG*

>peptide 2 (63 aa)
GVSESFQVATSFAYLSPFTTSSTANDSSSTISSGVSFTDRAPMFWLKFSILVVPGMGHTSFPW*

Sequence

>CNT30703860
GTGGGGTTTCAGAATCCTTCCAAGTTGCAACCTCCTTCGCATATCTGTCGCCCTTCACGACATCCTCAACAGCAAATGATTCAAGTTCAACCATTTCTTC
TGGTGTCAGTTTCACAGACAGAGCTCCAATGTTTTGGTTAAAGTTTTCAATCTTGGTGGTTCCAGGTATGGGACACACATCCTTTCCTTGGTGATGAACC
CAAGCCAGTGCTAGCTGTGATGGGGAGCATCCCTTCCTTGCTGCCATTTCATTAACACGCTCAAATATGGT