CANTATAdb - search

Detailed information on CNT30703611

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3037313	Quercus lobata	Cucumis melo	24.44	31.97	82.27	141	forward

Expression of CNT30703611

Peptides detected in this lncRNA

>peptide 1 (31 aa)
NCFTSPEVSFTSLSLALMAASLSSMNLPTGV*

>peptide 2 (36 aa)
QLLHLSRSVLHVVELGPYGSISFVHEFANWGVVDLV*

>peptide 3 (84 aa)
MRNKNSATMIGRVRLKSKSAAFSISTDREGGARVSEVAATRDRDLSVEVESLRSWCFVIFGVGSLGIWVLEWWRVRESVGLRFW*

>peptide 4 (39 aa)
MIMLAMPAYCFTVTDMSLFVLLGEREFVCVCVLRDMAGF*

Sequence

>CNT30703611
CCAACTGCTTCACCTCTCCAGAAGTGTCCTTCACGTCGTTGAGCTTGGCCCTTATGGCAGCATCTCTTTCGTCCATGAATTTGCCAACTGGGGTGTAGTA
GATCTTGTCTAGAGCGACCATGAGGAACAAGAATTCTGCCACGATGATTGGGAGGGTGAGGTTGAAGTCGAAGAGTGCTGCTTTTTCCATCTCTACAGAT
AGGGAAGGTGGGGCCAGGGTGAGTGAGGTGGCGGCTACTAGGGACAGGGATTTGAGTGTGGAGGTTGAGAGTTTGAGGAGTTGGTGTTTTGTGATTTTTG
GGGTTGGGAGTTTGGGGATTTGGGTTTTGGAGTGGTGGAGAGTGAGGGAGTCGGTGGGGTTAAGGTTCTGGTAGAGGCCATGATCATGTTGGCCATGCCT
GCTTACTGCTTTACTGTCACTGATATGAGCTTGTTTGTTCTTCTGGGAGAGAGGGAGTTTGTGTGTGTGTGTGTATTGCGTGATATGGCTGGTTTCTGAG
AAGGATGTGTGGGGTGAGAGGGGAGTGGAGGGCTATCTCATTCTTTGCCACACAAATTGATAAATTTTGTGGTCGAG