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Detailed information on CNT30703590


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069429Quercus lobataQuercus suber18.9588.1999.55224forward
CNT30362772Quercus lobataSorghum bicolor5.6729.1388.0667forward

Expression of CNT30703590

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVQIITHKSHELIQSGQTKHETSIVLQQYGSKNLK*

>peptide 2 (36 aa)
HNDRLLCFNSFAFRFSLSPFQETLSLCSLVLGPVLE*

>peptide 3 (61 aa)
MKPPSCYNNMVRKISNNWSSKKKKKSKNQMVYIPRFLSRVLVNWLRAGGTLSLCLRILFFL*

>peptide 4 (83 aa)
MSLKEDHNKVKHNCTTQSDRFKSISLKNNREMQAQRQLYHILERHSPIEIHIHSITKTILKMPLKKTHNWLTDYIRELSNYSH*

Sequence

>CNT30703590
CACAACGATAGGCTTCTTTGCTTCAACAGTTTTGCCTTCAGATTCAGCCTGAGCCCTTTTCAAGAGACGCTCTCTCTTTGCAGCCTTGTCCTCGGGCCTG
TACTTGAGTAGCATCTTGAACAAGTTTGTTGCTGCCCATATGAGTTTAAAAGAAGACCACAACAAAGTCAAACACAATTGCACAACCCAAAGCGATAGAT
TCAAAAGCATTTCGCTTAAAAATAATAGAGAGATGCAAGCCCAGAGGCAATTATATCATATACTTGAACGACACAGCCCTATAGAAATCCATATCCATAG
TATAACAAAGACCATACTTAAAATGCCATTAAAAAAAACACACAACTGGCTAACAGATTACATCAGGGAGCTATCAAATTACTCCCATTAGGCCAGACCG
GCCCAGACAACTATAAGTCTTGAGCCTTCAATCAAGGAGAGCACATCACACGATATCTTTAAAATTAGGCCCAATTAACCATTCCATGTTTTTCTAGACT
AACCATTTCTTTAAAGACAATAATTATAGGATTCATATTATAAAGCTATTCGTCGCATAAATCTAATGTAAATTTAATAACAACACATATAATGTTCCTA
GATAGAGAACAATACCACACAACCAAGTTCAGCCATGGTTCAAATAATAACTCATAAATCACATGAATTAATTCAAAGTGGCCAAACCAAGCATGAAACC
TCCATCGTGTTACAACAATATGGTTCGAAAAATCTCAAATAATTGGAGCAGTAAAAAAAAAAAAAAGAGTAAGAATCAAATGGTATACATACCCAGGTTC
TTGTCGAGGGTTTTGGTGAACTGGTTGAGAGCTGGTGGGACCTTGAGCCTCTGCTTGAGGATCCTTTTCTTCCTCTGAAGCTGAACAGTCTTAGGCCATT
TGACGAATCGGGTCAGATCTCTCTTCGGTGGCAAAGCCCCACCGATCCCAAACTGCTTAGGACGCTTCTCGAACAATGGGTTCAACACCTTCTCCGTCTT
CTTCTTCGATGCTGCTGCTGGCACTGGCCATTTGACGAATCGGGTCAGATCTCTCTTCGGTGGCAAAGCCCCACCGATCCCAAACTGCTTAGGGCGCTTC
TCGAACAATGGGTTCAACACCTTCTCCGTCTTCTTCTTCGATGCTGCTGCTGGCACTGGTGCCTTTCCACCTCTCTTTGGAG