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Detailed information on CNT307034


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 8e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677435Zea maysSetaria viridis15.0828.1387.39119reverse complement
CNT30524561Zea maysSetaria italica20.5313.9195.06162forward
CNT30639598Zea maysNymphaea colorata17.6223.2881.29139forward
CNT30533654Zea maysEucalyptus grandis15.0824.2985.71119forward
CNT30514302Zea maysJuglans regia16.3522.5989.92129forward
CNT30275526Zea maysChenopodium quinoa17.3624.8283.94137forward
CNT30180424Zea maysSecale cereale19.0123.1889.33150forward
CNT30221624Zea maysHordeum vulgare19.0122.1288.67150forward
CNT30387746Zea maysTriticum turgidum19.012688150forward
CNT30249706Zea maysAvena sativa19.0123.1588.67150forward
CNT30470142Zea maysSaccharum spontaneum67.370.9986.06531forward
CNT30135597Zea maysLolium perenne19.0129.0188.67150forward
CNT30624138Zea maysDaucus carota17.8726.4580.85141forward
CNT30346089Zea maysEragrostis tef17.3624.3895.62137forward
CNT30597257Zea maysOryza meridionalis19.2630.4690.13152forward
CNT30371492Zea maysOryza glumipatula19.2628.3189.47152forward
CNT3053146Zea maysAmborella trichopoda17.2421.5982.35136forward
CNT30108688Zea maysOryza longistaminata19.2627.0990.13152forward
CNT30104475Zea maysOryza rufipogon19.2627.0590.13152forward
CNT30578401Zea maysOryza barthii19.2627.1990.13152forward
CNT30581754Zea maysEchinochloa crusgalli51.7153.3384.31408forward
CNT30118085Zea maysOryza nivara19.2628.4690.13152forward

Expression of CNT307034

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVDNFCAALLLQPSWLVQNCGMRHVFMLACFTFLPYCND*

>peptide 2 (45 aa)
MFLSDRNKTARPLSSPRSLQHAHQSPTSARRRGRNPSFCGGGERR*

>peptide 3 (46 aa)
MIYDVNSPLFRSFLSQKGGADKRKMEEHKPKEQRPKANENKPVMNE*

>peptide 4 (72 aa)
CSLAIATKPHALSLARAVFSTHTNRPQALAGEVETLAFAAAAREDDLRRELPPLPFLPQPEGRRRQEENGGA*

>peptide 5 (82 aa)
MFSCLLASHSCPIVMIEQAVSTVGHRTDLRPLHSIEIRSSVCCMESSSWSNLFWLPKFLRCCWPFWCCMRSLKALILVCLCCS

Sequence

>CNT307034
ATGTTCCTTAGCGATCGCAACAAAACCGCACGCCCTCTCTCTAGCCCGCGCAGTCTTCAGCACGCACACCAATCGCCCACAAGCGCTCGCAGGAGAGGTC
GAAACCCTAGCTTTTGCGGCGGCGGCGAGAGAAGATGATCTACGACGTGAACTCCCCCCTCTTCCGTTCCTTCCTCAGCCAGAAGGGCGGCGCCGACAAG
AGGAAAATGGAGGAGCATAAACCAAAGGAGCAGAGGCCCAAGGCTAACGAGAACAAGCCTGTGATGAACGAATGAATATCTCCAGAAGCTTTGTTCAATG
TGCAACCAAGTCCGATGTCCGTTTGCTCTGGTCAGCTTAAAACCAACGCTTCCAATAATCCTATATTGGTGACTTAGTTTCCCCTTATAGTGTTATTTGC
TCGGCTTGAACATGGCAACGGAAATGAAACTTGAACTACCTATGGTACTGTCATCAATTTGAGACTCCCATGGTTGACAACTTTTGTGCAGCTCTCCTGT
TACAGCCGTCGTGGTTGGTACAGAATTGTGGGATGCGTCATGTTTTCATGCTTGCTTGCTTCACATTCTTGCCCTATTGTAATGATTGAGCAAGCAGTAT
CTACTGTAGGTCATAGGACGGATCTTCGGCCGTTGCATAGCATCGAAATCCGTAGCTCTGTTTGTTGCATGGAGTCATCGTCATGGTCTAATTTGTTTTG
GCTCCCCAAATTTTTGCGCTGTTGCTGGCCTTTTTGGTGTTGCATGCGAAGCCTGAAAGCGTTGATCCTGGTTTGCCTCTGTTGCTCTA