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Detailed information on CNT30703138


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 3e-106

BLAST vs NONCODE:
NONMTRT000178, E-value = 6e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Quercus lobataSetaria italica41.629.0783.49218forward
CNT30530404Quercus lobataEucalyptus grandis62.7992.6882.07329forward
CNT30316147Quercus lobataCorylus avellana87.7961.7486.96460forward
CNT30375121Quercus lobataArabidopsis thaliana22.916.4283.33120forward
CNT30499549Quercus lobataCoffea canephora76.3481.6382.75400forward
CNT30615836Quercus lobataSesamum indicum60.582.7781.39317forward
CNT30268105Quercus lobataChenopodium quinoa67.3742.0781.3353forward
CNT3021247Quercus lobataCitrullus lanatus76.9143.7681.89403forward
CNT30729539Quercus lobataCorchorus capsularis66.2251.6483347forward
CNT3068683Quercus lobataQuercus suber89.595.3398.29469forward
CNT30524728Quercus lobataPhaseolus vulgaris75.7673.5282.12397forward
CNT30486152Quercus lobataOlea europaea72.7142.185.3381forward
CNT30506399Quercus lobataNicotiana attenuata52.182.4885.71273forward
CNT30636701Quercus lobataCapsicum annuum52.4866.9177.82275forward
CNT30182233Quercus lobataSecale cereale63.3653.3881.33332forward
CNT30289293Quercus lobataTriticum aestivum22.5238.8285.59118forward
CNT30223417Quercus lobataHordeum vulgare39.3190.7585.92206forward
CNT30590847Quercus lobataMusa acuminata38.7444.4284.73203forward
CNT3084565Quercus lobataVigna radiata75.7623.4983.63397forward
CNT30539234Quercus lobataBrassica napus75.1943.0682.49394forward
CNT30143836Quercus lobataMedicago truncatula70.863.6482.75371forward
CNT30244810Quercus lobataAvena sativa55.7336.1480.14292forward
CNT30261302Quercus lobataBrassica rapa75.1976.2182.49394forward
CNT30457070Quercus lobataSaccharum spontaneum74.8157.5680.36392forward
CNT30134072Quercus lobataLolium perenne42.7530.8583.93224forward
CNT3066796Quercus lobataLeersia perrieri54.7773.7881.88287forward
CNT30653881Quercus lobataRosa chinensis76.9137.7384.62403forward
CNT30713695Quercus lobataMalus domestica golden33.7839.2589.83177forward
CNT30339698Quercus lobataEragrostis tef47.3320.0884.27248forward
CNT30477892Quercus lobataArabidopsis halleri71.7635.1484.04376forward
CNT30363710Quercus lobataSorghum bicolor43.739.0182.1229forward
CNT30595456Quercus lobataOryza meridionalis66.7961.481.71350forward
CNT30360575Quercus lobataLactuca sativa60.3152.486.08316forward
CNT3055709Quercus lobataAmborella trichopoda42.1833.7983.71221forward
CNT30105598Quercus lobataOryza longistaminata53.0540.3582.73278forward
CNT30319856Quercus lobataAsparagus officinalis39.573.9383.09207forward
CNT30574680Quercus lobataOryza barthii46.7626.7582.45245forward
CNT30579496Quercus lobataEchinochloa crusgalli41.0354.9984.65215forward
CNT30497454Quercus lobataDigitaria exilis59.9284.4180.89314forward
CNT30115589Quercus lobataOryza nivara46.7617.1782.45245forward
CNT30594668Quercus lobataEragrostis curvula51.1579.5380.6268forward
CNT30603506Quercus lobataOryza punctata67.7570.7281.69355forward
CNT30174824Quercus lobataVigna angularis50.762881.2266forward
CNT30550386Quercus lobataOryza brachyantha28.4454.1885.91149forward
CNT30332943Quercus lobataCynara cardunculus63.7464.1182.34334forward
CNT3064271Quercus lobataSelaginella moellendorffii51.9149.4579.78272forward

Expression of CNT30703138

Peptides detected in this lncRNA

>peptide 1 (42 aa)
DLNACTSMIVHGQRFRRTIDVSPIGFDLRVLQWISVHLTCAR*

>peptide 2 (74 aa)
MVDLIDLEQERLDDVVSDKLEPRVTEMVHHVLFPSGEEVIDHDHAIASLHQTVDQVGPNEPGPAGHHDPQTLAF*

Sequence

>CNT30703138
CTGACCTCAACGCCTGCACCTCTATGATAGTCCATGGTCAACGTTTCCGCCGTACGATTGACGTTTCCCCAATAGGTTTCGACCTGAGGGTGTTGCAGTG
GATCTCCGTACACCTCACTTGTGCTCGTTAGCAAAAACCTCGCACCCACTCTCTTCGCAAGTCCCAGCATGTTCAATGTCCCCACAACATTGGATATGAT
GGTCTTGACGGGGTTGAACTTGTAGTGAACAGGAGAGGCAGGGCAAGCGAGATGGTAGATCTGATCGACCTCGAGCAAGAGAGGCTCGACGACGTCGTGT
CGGATAAGCTCGAACCTAGGGTTACCGAAATGGTGCATCACGTTCTCTTTCCTTCCGGTGAAGAAGTTATCGACCACGATCACGCTATCGCCTCGCTCCA
TCAGACGGTCGACCAAGTGGGACCCAACGAACCCGGCCCCGCCGGTCACCACGATCCGCAAACCCTTGCGTTTTAGCCCCAAGGGGACTTTGCCGGAGCT
GTACATGTGGAAAGCTGAGCGGTG