CANTATAdb - search

Detailed information on CNT30703016

BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30318042	Quercus lobata	Corylus avellana	9.9	27.01	92.98	57	forward
CNT30515780	Quercus lobata	Juglans regia	31.77	25.28	84.7	183	forward
CNT30727307	Quercus lobata	Corchorus capsularis	48.09	20.01	78.7	277	forward
CNT30381078	Quercus lobata	Manihot esculenta	49.31	24.85	80.28	284	forward
CNT3033699	Quercus lobata	Theobroma cacao	49.13	20.29	78.8	283	forward

Expression of CNT30703016

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MAVKDSIDIVLFMAHNRFVTSNLLHSWDYSVFLHLGFFSHLGRDCLNIFSKLGSAEIHH*

Sequence

>CNT30703016
GTTTGTGTGACATACAGCCACTGCTTTAGCTTTTGTTCCATCAGCACCCTCTAGTGGCACCATATAAGCCTGTGTGGTCTCTGTTGCATGGCAGTAAAAG
ACAGCATAGACATAGTTCTGTTTATGGCACACAACAGATTTGTCACTTCCAACCTTCTTCACTCCTGGGACTATAGTGTATTTCTGCATCTGGGTTTCTT
TTCCCACCTCGGTAGAGATTGCCTGAACATCTTTTCCAAGCTTGGAAGTGCTGAAATCCACCATTGACTCTAATGATGTTGCACAATATTTTTCCTCCCC
TTTGATGCCTGTCTTTTCACATTCTTCAATTGTGCTTTGAATTATATCAGCTTCCATTGACCCAGGCTTTCCTTTGTGGCCTGTGCTCACAGATACTCCT
CCTTTGCCAACACCGACATTGGTTCCTTTGCCGCCTGGCTTTCCAGTTTGCACTCCAACTCCTTTGCCTCCAACACCGACGTGAGTGCCGCCACCAGCTG
GCTTTCCTTTTCCTGCATCAACGTTTACGCCACCCTTTCCTACATCGACTGAAGTGCTTTTGTCATCGACCAGGCC