Detailed information on CNT30702960


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 8e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730067Quercus lobataCorchorus capsularis28.075.8984.87119forward
CNT30380859Quercus lobataManihot esculenta27.8323.8988.14118forward
CNT30488421Quercus lobataOlea europaea29.9528.9383.46127forward
CNT3046546Quercus lobataPrunus dulcis33.2513.0783.69141forward
CNT30163033Quercus lobataPistacia vera24.537.6787.5104forward
CNT30567424Quercus lobataActinidia chinensis32.7816.5782.73139forward
CNT30228634Quercus lobataAnanas comosus24.5310.8884.62104forward
CNT30151890Quercus lobataPrunus persica24.0617.8990.2102forward
CNT30707566Quercus lobataPrunus avium33.256.8783.69141forward

Expression of CNT30702960

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSLPDPSVKLRWFWRGTHLLHWDRFGTQKTEGI*

>peptide 2 (31 aa)
VSKVPSQSRVRFFGSRISATHLPQCRCLTPL*

Sequence

>CNT30702960
CTGTGTCGAAGGTGCCGAGCCAGAGCCGAGTTCGGTTCTTTGGTAGCCGAATCTCAGCGACCCATTTGCCCCAATGTCGCTGCCTGACCCCTCTGTAAAG
CTTCGTTGGTTTTGGAGGGGAACCCACTTGCTTCATTGGGATAGGTTTGGGACTCAAAAAACTGAGGGTATTTGAAGAACAAGAACCATGCTGTGGCTGT
TGATTTTGTGGGTAAAAGTGTTGGCTTTGGAGGTGGTGAGGAAGAAGAAGGAGAAGAAGTAAGAAATGGAGACTGGGTTTCAGAGGGAGAGCTTGTTGTG
GGTGTTGAGGAAGTACTTTTCATAAAAGGTTCAAGTGCTTCCATTAGCTCACCCCCAAAGGGTACTGATGACTGAAGAGCTCTGCTACTGTAGAAATCCA
TTGTAGCTGCCATGCCTTCAAAAC