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Detailed information on CNT30702609


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639807Quercus lobataNymphaea colorata98.3293.7396.521809forward
CNT30318212Quercus lobataCorylus avellana99.8468.3498.421837reverse complement
CNT30519047Quercus lobataJuglans regia99.5194.7298.311831forward
CNT30283192Quercus lobataChenopodium quinoa99.5186.9496.781831reverse complement
CNT3021658Quercus lobataCitrullus lanatus96.52100.0698.031776reverse complement
CNT30632349Quercus lobataVigna unguiculata98.3274.6997.241809forward
CNT30200773Quercus lobataPisum sativum98.3761.6197.021810forward
CNT30506608Quercus lobataNicotiana attenuata99.0870.9395.671823forward
CNT3047196Quercus lobataPrunus dulcis99.6276.7397.441833forward
CNT30638988Quercus lobataCapsicum annuum98.9795.5997.251821reverse complement
CNT30544406Quercus lobataBrassica napus98.3290.7796.631809forward
CNT3083352Quercus lobataBrassica juncea98.3298.5396.631809reverse complement
CNT30422282Quercus lobataPapaver somniferum10058.396.791840reverse complement
CNT3025914Quercus lobataPopulus trichocarpa97.66100.1797.611797forward
CNT30326143Quercus lobataAsparagus officinalis98.5358.8696.971813forward
CNT3036478Quercus lobataCucumis melo96.1458.1997.851769forward
CNT30334962Quercus lobataCynara cardunculus99.5748.8494.271832forward

Expression of CNT30702609

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MIRFSGLLATSPAANRPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 2 (61 aa)
IRGSFCCAGFDNDPSAGSPTETLLRLLLPLNDKVQWTSRDVAGSEPPTSPRSEHFTGPFNR*

>peptide 3 (30 aa)
QFAGRSAVQVSTMILPQVHLRKPCYDFSFL*

>peptide 4 (32 aa)
MKYECPRLSLLIITPIPKANRIGPKSYDVIPC*

>peptide 5 (44 aa)
MHPFQKSGFVARISSRITTVIRVAGTIKQTITDLMSHSQFHSLN*

>peptide 6 (44 aa)
MKFQRLPGPVGQGYKLVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 7 (30 aa)
MMRRQHDGRAIRRVIMNQQSSEQSPRQPFI*

>peptide 8 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQQNRTEIL*

Sequence

>CNT30702609
CAATTCGCGGGTCGTTCTGCTGTGCAGGTTTCGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAA
GGTTCAGTGGACTTCTCGCGACGTCGCCGGCAGCGAACCGCCCACGTCGCCGCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCG
GTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCAT
CACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGC
ATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAGGGTCACCTCCGCATAGCTAGTTAGCA
GGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCA
GTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCC
TTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGTAACATCCGCCGATCCC
TGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTT
TCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAG
GCCAACAGAATAGGACCGAAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGCA
CCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGGTAGAAGGGACGAGCAGACCGGTGCACACCAGGGGCGGACCGCTCTGCCTAACCCA
AGGTTCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATC
CTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCGTGAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTA
ATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA
GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACGATGGCCGTGCGATCCGTCGAGTTATCATGAATCAGCAG
AGCAGCGAGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTA
TCCGAGTAGCAGGTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAA
TCTTTGAGACAAGCATATGACTACTGGCAAGATCAACCAG