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Detailed information on CNT30701990


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 5e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316392Quercus lobataCorylus avellana98.2927.7383.1574forward
CNT30515782Quercus lobataJuglans regia86.9939.9180.31508forward
CNT30501297Quercus lobataCoffea canephora22.4331.5786.26131forward
CNT30710978Quercus lobataGlycine max26.7157.1481.41156forward
CNT3098801Quercus lobataSolanum tuberosum24.8339.9482.76145forward
CNT3085653Quercus lobataVigna radiata84.0824.4277.19491forward
CNT30171019Quercus lobataTrifolium pratense22.4338.5383.21131forward
CNT30143980Quercus lobataMedicago truncatula20.3830.4384.03119forward
CNT30652116Quercus lobataRosa chinensis23.1220.1285.93135forward
CNT30129573Quercus lobataCorymbia citriodora54.7933.5883.12320forward
CNT30573477Quercus lobataVitis vinifera55.3120.6982.04323forward
CNT3024212Quercus lobataPopulus trichocarpa58.7354.186.3343forward

Expression of CNT30701990

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHVVNPSNCCNFIDKFLPISFGVTQHLYSY*

>peptide 2 (67 aa)
MSHPRCRYSIPRATPREILYVFSILKGILPSREKIYFSREPLGMNSYIRARFGPSAQKPMSCTTCTW*

>peptide 3 (74 aa)
LNGQQMHSHSFFCLPFPTITCQNYKHQLYRRPLQCFYRTTLELYILMFLLQQSKTLCYHSLDKVLQAQNQKLLE*

Sequence

>CNT30701990
GCTTGAATGGTCAGCAAATGCATTCACATTCTTTCTTCTGCTTGCCATTTCCAACAATAACATGCCAAAACTATAAACATCAGCTTTATAGGAGACCCCT
CCAATGTTTTTATAGAACAACTCTGGAGCTATATATCCTAATGTTCCTCTTGCAGCAGTCAAAGACACTATGCTATCATTCGCTGGATAAAGTTTTGCAA
GCCCAAAATCAGAAACTTTTGGAATGAAGTTCTCATCAAGAAGAATGTTATGAGGCTTGATATCAAAATGCAGAATTTGCATGTCACATCCTCGATGTAG
ATATTCAATCCCACGAGCCACTCCAAGAGAAATCTTATATGTTTTCTCAATACTTAAGGGGATACTTCCTTCTCGAGAAAAAATATATTTTTCAAGAGAA
CCATTAGGCATGAATTCATATATAAGGGCACGTTTTGGTCCCTCAGCACAAAAACCAATGAGTTGCACCACATGCACGTGGTGAATCCTTCCAATTGTTG
CAACTTCATTGATAAATTCTTGCCCATTAGCTTTGGGGTTACCCAACATCTTTATAGCTACTAGAGGGCCACTTTCAAGCTCTC