Detailed information on CNT30701953


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SIF2|HS905_ARATH, E-value = 4e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675788Quercus lobataSetaria viridis29.3519.1585.1981forward
CNT30282455Quercus lobataChenopodium quinoa31.166.1587.2186forward
CNT30123042Quercus lobataPhyscomitrium patens23.9114.9387.8866forward
CNT30311909Quercus lobataCamelina sativa40.2223.4787.39111forward
CNT30468549Quercus lobataSaccharum spontaneum30.0736.0985.5483forward
CNT303048Quercus lobataZea mays21.7413.9588.3360forward
CNT30606370Quercus lobataGossypium raimondii40.9454.0790.27113forward
CNT30652736Quercus lobataRosa chinensis24.6411.7495.5968forward
CNT30625473Quercus lobataDaucus carota27.923.489.6177forward
CNT30351629Quercus lobataEragrostis tef35.5129.8884.6998forward
CNT30362691Quercus lobataSorghum bicolor23.196.4789.0664forward
CNT30371008Quercus lobataOryza glumipatula27.931.1784.4277reverse complement
CNT30107294Quercus lobataOryza longistaminata34.7835.2984.3896forward
CNT30103405Quercus lobataOryza rufipogon22.833085.7163reverse complement
CNT30558210Quercus lobataPanicum hallii30.0740.2986.7583forward

Expression of CNT30701953

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MIKLRSWLISAWNAKVSASAICASAITAPKESALEKTKERKQERNSDKIFLERVESNRIVMSERSV*

>peptide 2 (64 aa)
IADEFTKEDLFVAVEGVDDQAEKLVDLSLECEGLCISHLRVCHYCTKRKRARENERKKAREKQR*

Sequence

>CNT30701953
AATTGCTGATGAGTTCACGAAGGAAGATCTCTTTGTTGCTGTAGAAGGTGTTGATGATCAAGCTGAGAAGCTGGTTGATCTCAGCCTGGAATGCGAAGGT
CTCTGCATCAGCCATCTGCGCGTCTGCCATTACTGCACCAAAAGAAAGCGCGCTAGAGAAAACGAAAGAAAGAAAGCAAGAGAGAAACAGCGATAAAATT
TTTCTAGAGAGAGTAGAAAGCAATCGAATTGTTATGAGCGAGAGATCGGTGTAGAGGTGAGTGGGTTTATATAATT