Detailed information on CNT307019


BLAST search results

BLAST vs Swiss-Prot:
sp|P05348|RBS_MAIZE, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30685379Zea maysTriticum urartu14.2923.9888.05159forward
CNT30371494Zea maysOryza glumipatula12.312086.13137forward

Expression of CNT307019

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MGWDGQHTSVHAWIISSLPITNSLAAAAAMQRTTS*

>peptide 2 (68 aa)
MQGHDCNNGYITSSRELLESKGTMAGEKKKKKGKKERRNQASKGYTVTRSKTERQRRRMALATSSRRS*

>peptide 3 (43 aa)
MIATMDTSHPAENCWKAKEPWPGKRRKKKEKRKEETKQAKGTR*

>peptide 4 (60 aa)
INLTRCRIVLSAPRRIYIYSLYPYYMYMIAGACIHMFLTPSIYRRCSSFVAGIEVANARP*

>peptide 5 (68 aa)
MHRILPPLLTLPRLLEERRATGRLAVDLSPWNGATAVADEAIITVGAMAAWLPSMYVLAACLLAWVVL*

Sequence

>CNT307019
ATTAACTTAACACGGTGTCGTATAGTATTGTCGGCGCCTCGGCGGATTTATATATATAGTTTGTATCCATATTACATGTATATGATAGCCGGAGCTTGCA
TTCACATGTTCCTCACCCCAAGTATATATAGGCGTTGCAGTAGTTTTGTAGCAGGTATAGAGGTAGCCAATGCAAGGCCATGATTGCAACAATGGATACA
TCACATCCAGCAGAGAACTGCTGGAAAGCAAAGGAACCATGGCCGGGGAAAAGAAGAAAAAAAAAGGAAAAAAGGAAAGAAGAAACCAAGCAAGCAAAGG
GTACACGGTGACCCGAAGCAAAACCGAACGACAGAGACGACGCATGGCACTAGCTACTAGCTCACGCAGGAGCTAGCTAGCTAGCTAGCCGGCGGGGGGC
GGCCGGCGATGAAGCTGACGCACTGCGTCTGCTTGATGTTGTCGAAGCCGATGACGCGGTGGAAGGCGTCCGGGTAGGATTTGATGGCCTCCTGCAGCTC
CTTGTACACCTGGGTGGCGTCGTTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAGTAGCGGCCGTCGTAGTAGCACGGGGAGGTGGAGTTCTCGCGG
TACACGAAGCCGACCTTGCTGAACTCGAGGCAGGGTATCCAGCCGTTGCGCAGCAGGTAGTCCACCTGCTTCAGCAGGTCGTACGACAGCGTCTCGAACT
TCTTGTTGCCGTAGGCCGGCCACACCTGCACGTAGTACGTGTGTTTTGGTTCGTTTGGGGTTGGGAAATGGGATGGGATGGGCAACACACATCAGTCCAT
GCATGGATCATCAGTTCCCTTCCTATTACTAACTCGCTAGCTGCAGCTGCTGCAATGCAAAGAACTACTAGCTAGGATGCATTTGTTACCTGCATGCACC
GGATCCTTCCGCCGTTGCTGACGTTGCCGAGGCTTCTGGAGGAGCGGCGGGCGACGGGGAGGCTGGCGGTGGACTTGAGCCCCTGGAACGGAGCGACGGC
GGTGGCCGACGAGGCCATCATCACGGTGGGCGCCATGGCTGCCTGGCTGCCTAGTATGTATGTACTCGCTGCTTGCTTGCTTGCTTGGGTCGTCCTGTAG
TAGGCTCCCCCAC