Detailed information on CNT30701822


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SIF2|HS905_ARATH, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517803Quercus lobataJuglans regia42.7714.6689.21139forward
CNT30377298Quercus lobataArabidopsis thaliana38.7750.681.75126forward
CNT3071730Quercus lobataQuercus suber45.2336.2197.96147forward
CNT3047606Quercus lobataPrunus dulcis29.2310.9388.4295forward
CNT30566785Quercus lobataActinidia chinensis34.7742.4887.61113forward
CNT30175658Quercus lobataVigna angularis34.1544.9489.19111forward

Expression of CNT30701822

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MIKLRSWLISAWKAKVSASAICASAITAPKESALEKTKERKQERNSDKIFLERVESNRIVMSERSV*

>peptide 2 (68 aa)
YIRGIADEFTKEDLFVAIEGVDDQAEKLVDLSLESEGLCISHLRVCHYCTKRKRARENERKKAREKQR*

Sequence

>CNT30701822
ATACATCAGAGGAATTGCTGATGAGTTCACGAAGGAAGATCTCTTTGTTGCTATAGAAGGTGTTGATGATCAAGCTGAGAAGCTGGTTGATCTCAGCCTG
GAAAGCGAAGGTCTCTGCATCAGCCATCTGCGCGTCTGCCATTACTGCACCAAAAGAAAGCGCGCTAGAGAAAACGAAAGAAAGAAAGCAAGAGAGAAAC
AGCGATAAAATTTTTCTAGAGAGAGTAGAAAGCAATCGAATTGTTATGAGCGAGAGATCGGTGTAGAGGTGAGTGGGTTTATATAATTGAGGAGAGAGAG
GGTTTCCGATTAAAGCACGGAGAAG