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Detailed information on CNT30701438


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532296Quercus lobataEucalyptus grandis87.9487.2881.681283forward
CNT30316435Quercus lobataCorylus avellana52.510089.56766forward
CNT30512897Quercus lobataJuglans regia59.7788.3588.88872forward
CNT30500417Quercus lobataCoffea canephora78.6256.9581.431147forward
CNT30615929Quercus lobataSesamum indicum78.1434.0880.441140forward
CNT30279009Quercus lobataChenopodium quinoa81.4377.7581.731188forward
CNT30379426Quercus lobataManihot esculenta62.0378.1583.65905forward
CNT30525184Quercus lobataPhaseolus vulgaris88.1482.1283.051286forward
CNT30629001Quercus lobataVigna unguiculata7387.0182.441065forward
CNT30637458Quercus lobataCapsicum annuum75.8125.1982.11106forward
CNT3096981Quercus lobataSolanum tuberosum70.6691.8182.641031forward
CNT3086449Quercus lobataVigna radiata76.0870.6681.531110forward
CNT30538027Quercus lobataBrassica napus85.6865.9380.81250forward
CNT30511508Quercus lobataSolanum lycopersicum76.2285.0280.761112forward
CNT30172216Quercus lobataTrifolium pratense62.5153.5281.91912forward
CNT30145248Quercus lobataMedicago truncatula86.3664.1981.591260forward
CNT30311152Quercus lobataCamelina sativa85.6877.581.041250forward
CNT3061767Quercus lobataArabidopsis lyrata62.5855.9182.04913forward
CNT3073617Quercus lobataBrassica juncea70.9430.6481.451035forward
CNT30609009Quercus lobataGossypium raimondii58.1988.9982.92849forward
CNT30624513Quercus lobataDaucus carota88.0181.3281.311284forward
CNT30480747Quercus lobataArabidopsis halleri62.4478.5381.67911forward
CNT30423866Quercus lobataPapaver somniferum74.4384.9182.041086forward
CNT30706356Quercus lobataPrunus avium78.4182.3682.951144forward
CNT3032754Quercus lobataTheobroma cacao73.1381.3383.791067forward
CNT30120444Quercus lobataCitrus clementina87.5980.1379.891278forward
CNT30334102Quercus lobataCynara cardunculus70.4646.6481.711028forward

Expression of CNT30701438

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MASKLITDRQKPKSTNIEILKAMDSNTKSQPSKLRNHHGGEGQGAE*

>peptide 2 (48 aa)
MKGRLLLDIVICKSPSIFKLLSCKDKPLLVWWDTFLVLYLSLDIVNSV*

>peptide 3 (40 aa)
MVSELSTSKVIVLPVKVLTKICIPPLSRSTRWRVDSFWML*

Sequence

>CNT30701438
TTTAAGATACCACGACCATAACCAAACAACACTAAATTAAAGCAAGTTTAGAACATATTAGGAGCCATTATACAATGGCAAGTAAACTGATAACAGATAG
ACAAAAACCAAAAAGCACCAACATTGAAATACTCAAGGCAATGGACTCGAACACAAAATCACAACCATCCAAGCTTAGAAACCACCACGGAGGCGAAGGA
CAAGGTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCCTCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGCTGGTCTGGGGG
AATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTAATGGTCTTCCCTGTCAAGGTCTTAACAAAA
ATCTGCATTCCACCACGAAGGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCTGCAAGAGTCCTTCCATCTTCAAGTTGCTTTCCTG
CAAAGATAAGCCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCCTGTATCTTAGCCTTGACATTGTCAATAGTGTCTGAGCTTTCAACCTCCAAGGTTAT
GGTTTTTCCGGTCAAAGTCTTCACAAATATCTGCATTCCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCAGCTAAG
GTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATAG
TATCTGAACTCTCAACCTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTCACAAAAATTTGCATTCCACCTCGAAGCCGGAGCACCAGGTGAAGGGTGGA
TTCCTTTTGTATGTTGTAGTCGGCAAGTGTGCGACCATCTTCGAGTTGTTTACCGGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCT
TGAATTTTGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCATTCCACCTC
TGAGCCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTG
CTGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCTATAGTGTCTGAGCTTTCAACTTCCAAAGTTATGGTCTTCCCAGTAAGG
GTTTTAACAAAGATTTGCATACCACCACGGAGGCGGAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAGTCTGCCAAAGTGCGACCATCTTCGA
GTTGCTTACCGGCAAAGATCAACCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGG